CI01000304_16754929_16761111 (ALG5)


Basic Information

Item Value
gene id CI01000304_16754929_16761111
gene name ALG5
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16754724 ~ 16761111 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16754929_16761111.mRNA
GTTGTTGTGATTGCTCATGTCAGTGCTAAGATGGTAGATCAGACTCGCCATGAGAAGGAGAAACACTTTTTGACTGCAGATGGCAAGAAAGAGTCTTTTCCCAGTCTGATGGACCCTCCCTCATTGGATCTGTCTGTGATTGTCCCTTCATACAATGAAGAACTCAGATTGCCTGTTATGATGGATGAAGCCATGGAATACCTGGAGAAAAGACAGAAGGAGAATCCATCATTCACATATGAAGTTATTGTAGTAGATGATGGCAGCAAAGACAAAACTACAGAGGTTGCCATGAAATACACAAAGAAGTATGGAGCAAAAAAAGTGAGAGTTCTGACATTGGTGAAGAACCGTGGAAAAGGTGGTGCAGTTAGAATGGGAGCACTAAGCTGTCGTGGACGGCTTGTTCTTATGGCTGATGCAGATGGAGCCACTAAATTTGCTGACATTGAAAAGGTGGAAGATGGTCTTCAGAGCATCAGTGAGAAGCCTGATAACATGGCGATCTCCTGTGGATCCAGAGCGCACCTGGAAGAAGAATCAGTGGCTCAGCGGTCTGTGTTCCGAACGTTTCTGATGTATGGATTCCACTTCTTGGTGTGGTTCTTTTGCGTGAGGGGGATTAAAGACACACAATGTGGATTTAAGCTCTTCACTCGTGAGGCTGCCTTGAAAACCTTCTCCAGCCTGCATGTGGAACGCTGGGCATTTGATGTGGAACTTCTCTACATTGCTCAGTGTTTTGAAATCCCTGTAGCAGAAGTGGCTGTTAACTGGACAGAGATTGAAGTTGTTGTAAACTGTGAAAATGTCAAACTTCTAGACTCTCTGTCGCCATCCTGGCTTGCGTCATTAACTGGACAAGTCACTCTACGCACACAATCGAAGTGTATCCATCCGCGCCGAGGAGCGCAGGAGAAGTAGGGCTATCGATAACGTGCTGGCGCTCCGCCAATCTGCCACTAAATTTGTTTTGATTTTCACTATGCGAGCTTCTGCTACTTTCTACTTTAACTTTATTAATCATCTGCTTCCAAGTTCTAAACATATAGCAGGTAAATGTTTAGAGAGAATAGGGCATTTTTAAATGAACACCTGTTTTTTTCCCCACATTAAATTATTAAATAAA

Function

symbol description
alg5 Predicted to enable dolichyl-phosphate beta-glucosyltransferase activity. Predicted to be involved in protein N-linked glycosylation. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human ALG5 (ALG5 dolichyl-phosphate beta-glucosyltransferase).

GO:

id name namespace
GO:0006487 protein N-linked glycosylation biological_process

KEGG:

id description
K00729 ALG5; dolichyl-phosphate beta-glucosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16754929_16761111.mRNA True 1129 mRNA 0.44 9 16754724 16761111

Neighbor

gene id symbol gene type direction distance location
CI01000304_16746258_16751678 SMAD9.S, SMAD8A, SMAD9, SMAD8C coding downstream 3046 16745703 ~ 16751678 (-)
CI01000304_16722727_16724691 CCNA1 coding downstream 29876 16722567 ~ 16724848 (-)
CI01000304_16711244_16719831 SPG20A, SPG20 coding downstream 34893 16711244 ~ 16719831 (-)
CI01000304_16684166_16704849 DCLK1 coding downstream 48630 16684060 ~ 16706094 (-)
CI01000304_16651076_16668623 DCLK1, DCLK1A, DCLK2 coding downstream 85809 16649866 ~ 16668915 (-)
CI01000304_16765458_16765853 NA coding upstream 4028 16765139 ~ 16765853 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H coding upstream 8306 16769417 ~ 16780398 (-)
CI01000304_16783635_16804462 CLG3H21ORF91 coding upstream 22425 16783536 ~ 16804462 (-)
CI01000304_16816039_16828777 RIPK4 coding upstream 54339 16815450 ~ 16829000 (-)
CI01000304_16838208_16848663 POM121C, POM121 coding upstream 76636 16837747 ~ 16849079 (-)
G428681 NA non-coding downstream 145710 16603550 ~ 16609014 (-)
G428638 NA non-coding downstream 160215 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 474203 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 534311 16220029 ~ 16220413 (-)
G428509 NA non-coding downstream 534832 16218523 ~ 16219892 (-)
G428707 NA non-coding upstream 51073 16812184 ~ 16812467 (-)
G428710 NA non-coding upstream 117958 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 125343 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 153698 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 190090 16951201 ~ 16955072 (-)
G427376 NA other downstream 1493319 15258964 ~ 15261405 (-)
G427423 NA other downstream 2392832 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2467120 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2485153 14265476 ~ 14269571 (-)
G427309 NA other downstream 2546425 14181932 ~ 14237078 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other upstream 93454 16854565 ~ 16860911 (-)
G429331 NA other upstream 1162752 17923863 ~ 17924684 (-)
G429499 NA other upstream 1476608 18237719 ~ 18238319 (-)
G429673 NA other upstream 1825331 18586442 ~ 18591856 (-)

Expression


Co-expression Network