CI01000304_16838208_16848663 (POM121C, POM121)


Basic Information

Item Value
gene id CI01000304_16838208_16848663
gene name POM121C, POM121
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 16837747 ~ 16849079 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_16838208_16848663.mRNA
AAAATAAAGCAACAGGGCTTATGTTATGCAGCATGAGCATAATTTGCTAACATGACAAATCTTGTTAAATGTATTAGAATTAAGTTAATATAAATTTGTTAGAGCATAGCCTACTTTATACTGTATCTTTTCCTTTTAAGCTCCTTTGTAATGCTCATTATTCTCAATGGTAAAATGGTTGGTAAAACAAGCTATAATAGTGAGTAAATACAACTGTGGCTACTGTGTAGTATTTGTGCAAAATGTAATATAAACAGAAAGACTGGTGTTGCTTTACAATACAACACTAGTGGGCGGCAAAACACTGTAATCAATCTAATGTGCACGCGTGCAGTCACGAACATCCACGAGACGTAAACAACGCGCGCGGTCGCGGGGAATTATGGGATATCTTCCCTCGGCGGCGCGGTGCCGCCATGTCTCCTGAAGATAAACGGCGGCTAGTCGTTTTCTCCGCTGTGGTGTTTTCTTTGTTCCTTCTTTTACTCGTTTTGAGCTACATACCAGCTTATTTGTATATACTTTTTATCTGTGTCGTGTCTTGTGTCGTTTATTTTCACAAAGCGGAGGAGTTGCAGCTCTTCGAGAGACTAGGCCTCAATCCTCGCCGTGGACTGAGCGTCCCGCCGGCTCTGTTGCGCTGGTTACCGGGTAGGACTTTGAGCGGAGTCCCGGCCGCCAGCAGAAACAAGATACGTAAAAGTGATGCTAGAAATTCCTTTGCGTCACCCAGCGATAGACATTTTGCAGGCTCGTATTATAGAAGAGACCACACGCTTAGTGACACGGTGTTCAGCCCCCGGGATATACTCATGGGAAGTTACCTCGCCAAAACTGAAGAAAGCCCCTCCGCAGCCTTGAGGCCCGCTGGAGGCTCAGGGGCTTTCATCCACCCCAGAGATCAGCTCCGGGAGAGACTCGCCCGACCTAATCATGCTGTGCACACCCCTAACAGAAGACTGTCATTCGGGGATCCTGTGGGCGCTGCGAGTCGATTCACCATCACCCCCCAAAGACATTACCCCCTTCAGCAGACGGGGACGTCTCCCATTGGAGTGATGCCACCTGCAAAATGGGATGGATTCCATAAGAAGAATATCCTCACCCAACGCAATTCACCTACTGTTCACAGTCCAGTCACAGTGAAGATCGCCAGACCAGACCCCACACGATCATCGTTCTTCAATCACCTGAACTCCCCTGGAGCTGCCACATCCCCAGGGATTGGAGCCCAGACAGACCCCTGCTCCAGAGAAGCTGTTCTGAGTGTGCTCAGAGAGAGCAGAAAGAGAGAGGTTGATGAGGAGGAGAAGAGTGCTTCCTCTGGGCAGAAGAGCAAAAGGAGGCGACATGACAGCAGTGGAAGTTCTCAGTCAGCGTTTGAGCCGCTTCTTGCAAATGGAGCTCTGTCTCAGCTTGTGCCAAAACCTGGCAGTCTGAAGAGAGGGATAAACTCCTCTCTCAATGAAGAGTCCATTATGAAGCGCTCTCGCACCTCCTCCATCAGCTCCGTAAGTGGTGCTCCTGTTCCCAGCGGGGTGCCTGGATCTGTCCGAAATCCCATTCGCAGTTCCTACAGCTCCTCACAGGGTTATCCACAGAGAAGAGCGGCATCCAGTCTCAGTCTTTCTCCTTTTACAAGCCCAGGAGGATCTCGTTGTCAGACTCCAGAGAGAGCTGCCAAGAAAGCAAGGGAGGAAGATGCTACTTCACCAAGTTCCACATCCTTTGTGAAAATGGATAAGGTGACAACTGACCCTGCACCTGCGATAACCAAACTTACTCCAAAATCTGAGGCACCTGTTGCAACATCAACATCAGACTCTGGAGGCAGCAGTGGGAAACGTAAACGCAAAATCCAACTAGTCACCTCAAACAGAGGAGATCAGATTTCTTTGCCACCACCTCCTGAACTTGGATATACAATCACAGTGAAAGATCTAGATATGGAAAAGAAAGCAGCACTCAGCCAGATACAGAAAGTCCTGGAGGAACCTGAGCCAGAGATCACTCCTCCAGCATCTGAACCCACCCCAGCTCCAGCTCCCTCTTTAACCCTGTTTTCCCAGCCTGTTCCAACCTCCTCATTTGGGACTGCACCTGCTGTGAGTGCTGCGCCCGCTCTGGTTTCTCTCTCCACATCTGTGCCTGAGACCACACCAGCCACTACTACAACTCCTGCTCCAACAATTGACCTCACCATCACTGCTCCCAGCACAGCCAGTACGGCACCCCTGACTCTCACCTTAGCCCCCTCCATCACTACCACCACCTCAGCTGCCCCAGCTTCAAGCATTTCAAACCCTCTGCTGGAGTCCCTGAAAAACATGAAGAAAAATCCTCTTCTCAATGCTCCCACTATGATGGGTGCTCCCACTATGATGGGCACTACCACTGCAGCTCCAGCAGTGTCTGTGTCTAGTTTTTCTACACCTGCTGTATCCACAAACCCAAGCAGTGGAGTTGTCAAATCTGAGTCAGGCTTTGCCACTCTGCAGACCTCATTCTCTGCCCCATCCACCACATCAAATTCTGCTTCCAAGCCAGCCACCTCCATGTCCTCTGCCTTCGCTCAGATCTTGGCCCAACCTCTTCAACTCCCATCAAGCACGCCATCCCTGGGCGGAGGAGGCAGCCTGTTCAGTTTGATCAAACCTGTGGCCACATCTGCATCTGAGCCTCCTAAATCTACAGCTGCTGCACCTACAGCCATGGTCACATCAGTCAACAGCATTAGCAACCCCCTGTCATCTTGCTTTAAGCCCATTTTCGGTGCAGCAAGCACCACCCCTGCTTCCACAGCAGAGATCAAACCCACCCAGCACACCTTCAAGCCTATATTTGGCAGTACCACAGGAAGTGGCATTAGTGCCTTTGGGCAGACAGCCACACCGACGACATCAACCCCTGCTGCACCGGCTTCACAGAACAGTGGGATGATATTTGGTGGACTAACCAGTACCCAACCAACAATGGTGTCTGCTGCTTCTGCAGCCCCGGCCACACAGACTCCATCCCAGTCTCTGTTTGGAAGCTGGACCGCAACAACCACATCCGCTCCTGCCACAAACTCCACGTTCCAGTTTGGAGCTGCATCGACCACAACAGCTGCCCCTGTGTTAAACACCAACACAGCTACTGCCGGTGGCACGACCTCTGCTTTTCAGTTTGGCGGGCCAAAACCTGCGCCCGCCCAGCAGGCTCAAAGCACGTTCACATTTGGCCAGCTGTCCGTGAACCAGAACTCCACATCCGCTCCGTTTGGTGGGTTCGGCATGACCAGCAATGCCACCACGTCCTCTGTGGCGTCCACAACGCAATCCACTTTTGGGAGCTCAACCTTCACCGCATCATCAACCTTCCCAGGATCCACACAGCAGGCCTCTGCTGTTCCAAAGCCTTTCACGTTTGGGTCCAGTGGTGGAAGTAGCGGCGCAGCACCATTTGCGTTTGGAGCCGCTGCCAGCACAGCAGCGCCTGCATTTGGGACTAACAGTCAGCCTACATTCGGAGCAGCATCATCTGGCTTCTCTTTTGGAAACACCACCACCCCTTCTGCGGCTCCCGTCTTTGGGGCCTCCACACAGACTGTGGCCTCTCTTCCTGCCCCAGGTCCTACGTTCAGCTTTGGAGGCGCATCAACAGCCACTCAGAGCACTGCACCGAGTACTCCGGCGCCTCCTGCCTCTGGAGGATTTAACTTTGGGGCCTCAATCTCAGCAACACCATTTGGAACCCCTGCGCCTGCAGCTCAGACACCAGGGTTTTCCTTTGGAGCCAACAACACTGATAACAAGCCTGCTTTTGGAACATCAACTCCTGCTTTTGGTCAGGCACCTGCAGGAATGCAGATGCCTTTCGGCAGTCCTGGAACCCCAGGATTTGGAGCAATGGGCGGCTCCCCGTTTGACACTGCTGCTGCTACTGCTGCTGGTCCAAACACAACAAGGCTGTCAGTCAGACCTCATCTCTACAACCCTCCAGACTGCCAGGGCTGGTCAGGCGTGTAGGATCAAGGCTCAGGGGGCGTAGATTTTAGAGTACCGGGCGGCCCCATCTCTGCTGTTGGGTGCGCCCACCGAGACTCATCACAACCTCGCTAATGGAGTCTGTAAATGTCTGATGAGGACGTCTGGTGTTGGGGAAGGATGGTGAACGGGAGCGAATTATACTTGAAAGAAAAAGAGACTTTCAAAACTGGACTCACATGAATTTCAGTCCAGGCCTGTTGAAAGAAACAGAATCTTATTTTTGACTTTTGTTTTTGGTAGAGTGATCAGATGCTCTTTATTTTAGATCCAGTGAATATACTTTTTTTTTTTTTTTTTGCAATTAGCAGACATTTGTCAAGTTTTTCCATCATGCTTAGCAGAATTGTCACAATTTTTTGTTAAGCCTTCAAAACGTGAATATTTTACCTGTTCCATTTAAAAAAATGCTTTTGTTTTGCCTGAGTGAGCTGCATAATAAA

Function

symbol description
pom121 Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to be part of nuclear pore. Orthologous to several human genes including POM121 (POM121 transmembrane nucleoporin).
pom121c Predicted to enable nuclear localization sequence binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in RNA export from nucleus and protein import into nucleus. Predicted to be located in nuclear envelope. Predicted to be part of nuclear pore.

GO:

id name namespace
GO:0017056 structural constituent of nuclear pore molecular_function

KEGG:

id description
K14316 POM121, NUP121; nuclear pore complex protein Nup121

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_16838208_16848663.mRNA True 4471 mRNA 0.51 13 16837747 16849079

Neighbor

gene id symbol gene type direction distance location
CI01000304_16816039_16828777 RIPK4 coding downstream 8747 16815450 ~ 16829000 (-)
CI01000304_16783635_16804462 CLG3H21ORF91 coding downstream 33285 16783536 ~ 16804462 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H coding downstream 57349 16769417 ~ 16780398 (-)
CI01000304_16765458_16765853 NA coding downstream 71894 16765139 ~ 16765853 (-)
CI01000304_16754929_16761111 ALG5 coding downstream 76636 16754724 ~ 16761111 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC coding upstream 5750 16854565 ~ 16860911 (-)
CI01000304_16868092_16872772 SMG8 coding upstream 18803 16867882 ~ 16872772 (-)
CI01000304_16874485_16876468 NA coding upstream 25196 16874275 ~ 16876468 (-)
CI01000304_16902774_16907628 RHBDD2 coding upstream 53021 16902100 ~ 16908819 (-)
CI01000304_16929873_16945323 GABRR3A, GABRR3 coding upstream 80369 16929448 ~ 16946827 (-)
G428707 NA non-coding downstream 25280 16812184 ~ 16812467 (-)
G428681 NA non-coding downstream 228733 16603550 ~ 16609014 (-)
G428638 NA non-coding downstream 243238 16587475 ~ 16594509 (-)
G428547 NA non-coding downstream 557226 16280266 ~ 16280521 (-)
G428502 NA non-coding downstream 617334 16220029 ~ 16220413 (-)
G428710 NA non-coding upstream 29990 16879069 ~ 16879279 (-)
G428662 NA non-coding upstream 37375 16886454 ~ 16886952 (-)
G428713 NA non-coding upstream 65730 16914809 ~ 16916803 (-)
G428729 NA non-coding upstream 102122 16951201 ~ 16955072 (-)
G428735 NA non-coding upstream 112020 16961099 ~ 16961332 (-)
G427376 NA other downstream 1576342 15258964 ~ 15261405 (-)
G427423 NA other downstream 2475855 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 2550143 14286960 ~ 14294449 (-)
CI01000304_14265881_14269102 NA other downstream 2568176 14265476 ~ 14269571 (-)
G429331 NA other upstream 1074784 17923863 ~ 17924684 (-)
G429499 NA other upstream 1388640 18237719 ~ 18238319 (-)
G429673 NA other upstream 1737363 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002913 pom121 coding NC_007121.7 CM002894.2 35169644 ~ 35186310 (-)