CI01000304_17488992_17490128


Basic Information

Item Value
gene id CI01000304_17488992_17490128
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17488124 ~ 17490494 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_17488992_17490128.mRNA
ACCTGGTACCTTGAATGAAGCCCCCCTTGTGTTATCACTTTGCTATGGTGGAGGGGTTTGCATGTCCTAGTGACCCTGGGAGCTACGTCAGCGGGAAACTAAGGTCCCTGACAGGTTCAACCATGCTGGATTGGTCTCAGGCAAAGGGACAGACTAAGGACAACACCTGGTCCTCCAGGTTGTGGGTTAGGCGTGGGGCCAACAGCCCCACCCTGTAAACACACCATTCTGTTACAGAAACCAAGACAAATGCAAATAACAACACCAAGCCTGGCAGTATGACCAACTCTGACAGAGGCCACCAGCAGGAGGTTAGGAGTGCGACAGACAGTCTGCTCAGCCCAAACAAAAGATCCACATTGGACCATGGAATATCCGAGCCATGTAGAATGGGAACCACTCTGTGAACGGATGATCAAAACATACTTCTATTCAAAGCACTGTAATCTCACCATCACACACCATATGGATATTGACATCAGTCCCCCAAACGAACACACGATCATCCAACATAAGGACATCCACAAGCTGACATGGAAATCACCTGATAGTAACACAATCAATCAGATCAACCACATCCTGTTCAACGTAAAGTTGCACAGGTCCTTCCAAGGTGTCAAAGTGTGCTTAGGTATGGATGTCAACAGTGACCACTACTTTGTGAAAATTACTATCAAATTCAATCTTTGTAAGATGTTGAGGAGTTTGTTGAGCATGGACAATACTGCAGCTAAGGGCATTAAAGCAAAACTAAGTAAAGCCCGCTGTGCATTCACTAGACTCCAGCCCAACTGGAAATCTGCACAATACAGCATCAGAACAAAGATGAGACTATATAACAGCAATGTCAAATCTGTTCTGCTGCATGGGTCAGAGTGCTGGCATGTCATTAAGTGTGACATGAAGAAGATTGAGGTATTCCACAACAATTGCATCAGGAGAATTTGCCATATCTTCTGGCCAGAGAGGATCTCAAATGCTGAGTTATATAAGAAGACCAACTCATAGCGCTGTAGAATGAAATGGCCTGGGCATGTCCTTCAGATGGACCAGAACCACATCTCGAAAGTAGCTATGAATTTGAGACCACCTAGGAAAAGTAAGCAAGGAAGGCCGAAAACAACTTGGAAGAGGAATGTAGAAGCTCAACTGAAAGAACCACACTTCTCATGGGGCGAAGGACAACATGCTGCCAATGATAGAACAAGATGGAAGCAGATTGTCACAGTCTTATGTTCCATAGGGAAATAAGAGGTATTAGTAAGTGTAACGTAGTGAGTAAATCTCACTCCCCTGGCCTCAAGAGGTGCACTAGCGAATGGCCTCTATTATGCTCATTTACAGGTTCTTAATTTAGTTTAGGGGTGTATTTTTTTTTATAATTTAAATTTACATTGTTGCTGCACCTGTTGCTTTCACCCTCTGTCTAAACGCTCTGTTTTAGTTTTCTTTAAAACTTTCAGCTCTATTGTGATTGGTCTATTGTCAGGAAGGTAACACTCCTTATACCATAACCGGTGGGTCCCGAGGCTTTCTGGGGCACTGAAAATCCTACCGTAACTATGCTAACTAACTTTAGTTAGTGCAGTTGGTGTGAGAGCAAATGTCCCTGACTGTGCAGCCTGTCATGGCCACCTCATCTTTATGATTTTTTTAGACACGTTAGCAAGTCGGGCAACACTCAGACACATTTCTAACTAGCATGCATCTTGTGGTGATCACTGGTGAAATATGCATAAATGGAATCATAGACTTTTATAACTAAAACTGTAAAATTTATTTATATTTTTATTAGATTTCTTTTTTTGTATAACAGTATTATGTGTTTGCCCTTTCAATTTCTTTAGACATCTGTACTTATGAAAATATAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_17488992_17490128.mRNA True 1876 mRNA 0.42 2 17488124 17490494

Neighbor

gene id symbol gene type direction distance location
CI01000304_17413669_17414667 OR109-1 coding downstream 73216 17413514 ~ 17414908 (-)
CI01000304_17369357_17411120 NA coding downstream 76921 17369154 ~ 17411203 (-)
CI01000304_17348461_17354382 NA coding downstream 133502 17348079 ~ 17354622 (-)
CI01000304_17332233_17338077 NA coding downstream 150047 17332233 ~ 17338077 (-)
CI01000304_17318429_17320775 OR109-13 coding downstream 167226 17318424 ~ 17320898 (-)
CI01000304_17538160_17540583 UBL3A, UBL3.S, UBL3 coding upstream 47666 17538160 ~ 17540583 (-)
CI01000304_17571701_17576895 KATNAL1 coding upstream 80730 17571224 ~ 17576895 (-)
CI01000304_17579139_17581078 NA coding upstream 88624 17579118 ~ 17581601 (-)
CI01000304_17582446_17582872 NA coding upstream 91750 17582244 ~ 17582872 (-)
CI01000304_17584110_17585466 HMGB1B, HMGB1, HMGB1A coding upstream 93366 17583860 ~ 17585669 (-)
G429172 NA non-coding downstream 128032 17344902 ~ 17360092 (-)
G428912 NA non-coding downstream 164569 17323213 ~ 17323555 (-)
G428909 NA non-coding downstream 171643 17316280 ~ 17316481 (-)
G428863 NA non-coding downstream 252428 17235442 ~ 17235696 (-)
G428860 NA non-coding downstream 262247 17225578 ~ 17225877 (-)
G429266 NA non-coding upstream 32888 17523382 ~ 17523715 (-)
G429216 NA non-coding upstream 38824 17529318 ~ 17529711 (-)
G429238 NA non-coding upstream 73606 17564100 ~ 17564398 (-)
G429220 NA non-coding upstream 75208 17565702 ~ 17568817 (-)
G429202 NA non-coding upstream 169380 17659874 ~ 17704143 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 620886 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 707165 16769417 ~ 16780398 (-)
G427376 NA other downstream 2226719 15258964 ~ 15261405 (-)
G427423 NA other downstream 3126232 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3200520 14286960 ~ 14294449 (-)
G429331 NA other upstream 433369 17923863 ~ 17924684 (-)
G429499 NA other upstream 747225 18237719 ~ 18238319 (-)
G429673 NA other upstream 1095948 18586442 ~ 18591856 (-)

Expression


Co-expression Network