CI01000304_17722987_17728462 (PLEKHB1)



Basic Information


Item Value
gene id CI01000304_17722987_17728462
gene name PLEKHB1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 17721207 ~ 17728565 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>CI01000304_17722987_17728462.mRNA
ACTGTCATCGCTCACAAACAAAAGCACAAACTCTGTCGTCACGTCAAACAAGCACCACAACATTGGGAATACTTCTATTGCTCTTGTGGCAGCTGACTGATCAATGGCTCTGCTCAAATCTGGCTTGCTCTGGAGACAGTCTTCAGTCCTCAAACGCTGGAAGCTGAACTGGTGTGACCTGTGGATAGATGGGAGTTTTGTTTTTTACAAATCTGAATCCAGAAGAGACTATGAGACCAGAGTGAATCTGAAGGCCACCTGTGTGAATGTGAAGTCTGGACTGGAGTGTGCAGGTGTATGTCCACCTGAGAGTCACCCCCGAGAGAATCTGCTGGTTGTTTATCTGAGGGATGGATCTACGCTGATCCTGTGTGCCAACAGTGAAGATGAGGCACTGGCCTGGAAACTCACGCTCATGGAGGCGAAAAGAAATCCAGTTTTCACATACAATCCCTATGACGATACTTACCAGACCGTTCCGATTGACAGCCATAATGCAGTTTACATCATGCCAGGAACTCAGCATGTCTGGGTGCACAGAGAATCTGATGACAATTTCGGAGAGCAGATTGCATTGGGGCTCCTGGCTGGAATGGCTGCGGGTGCAGCAATGCGTTCACTTTTATGGATGCCCTTCTGGTTCTGCTGAGGACCAGTCAGATAGCAGGATGAAAGAATACACTGGAAGAGACGTCCATAAAGCTCAGCGAAAGCAAACGCTCCTGTTCCTGCATATAAATATGTAAATATCAGAATAGCTGCAGCTGTTTTAAACTCACTGGGCATTAAGAGGTCAATCAATGTGTAAAAGAGGGATTCTAGCTGCTTCAAAACAGGACTGTTAAACAGATTTTTTTTTCCCTAATATGTGAAATATCAACAGATATTTCTGTAACATATCTATAGAATAATTCTGCACATAACTAAGGTTGTATTTTCTTGTTGTTATGATTCTGCTTTGTGTATAATGTACATGTAGAGCTTTGCAAATTTGTTCAGTTTTGTCCATGATTTATATTTGTTATCTTGTCAGATATCTATTTGTATTTATAAGTAGCTCCAAAACATTTTCTAACTATAAACCACGTGGAACCCTGAATTTATTATATTCTATAGCATGAGGTTTGGGAGTGACCGGCAGACCTTTGATTGCTCTCCAAATATAAAAATCTTGTGTGTTTATAGGAATTTTCTATCCACCTTTTTCCTGCGCCCCATGATGCTTTGCGCGAATTATGGGAGTAACTTCCGTTAAACTGTAAACAATCAGCGAAAGGTTCGCATTATGAGCGCAATAAGCATTTTCAAAAACTGGGTGCAATTCAGTCAACCTGACGGATAAGGATTATTTGTAGCATAACCATATGATTATTTTAAAATGATCTCTTTCAGTGAGTGGATATTTCCCAAACCGGAAGTGCCTCCCGTAATCTCAGTAGGCTAGTTAGGAAAAAGGTGGATGAAAATATGATGCTGAAATAGTCACCAAAAGCCGAATATATTCATTATAATGAAGGTTTGAGAAATGCCTTTGAAATATCTCAATAGAGTACCTCAGGGATGACGTGTTTTTGTAGGCAAAACCCGGAAGCGAGTTAGCATTTTAGGACTTCTGGTTCCATCGCCCCAAAGTCAGTGGGTTTTTTGAATGGTTTTTTTTGCTAAAATCGCCTGAAATAAGGTCTGTGGTTAACAAAGCCTCTAAATATTTTCACGTTTTGATCTATGACATAAAACACACCAGTTATAACCCGCTTGTGATTTTTTAAACCTTTATTGTGTCTTAAAAACGGCAGTTGCTAACAAATTGCTAAAAGGGACTACTTCCTTTGGCGGGGACTTTAGACGTCATCATGACAAACAGGACATTTGGACAGCATTTCTCATGAAAAAGTGGATAAGTATTCATACACAGCGCAGATCATAATCAGCGAACATATTTTTAAATAAAGTTGTTTTCTAAATAAAGTTTGAGGAAGCTTGGTGGTGGTGACGTTGATCCGTGATCATGGTGTGCTGTAATCCGTTTATAGCCTGCTGTTAGCTTTTTATATCTGACAACTTTATTTAGGCTTCAAAATGTAAAAATGTTGTGTTAACTTGTAAAGATTATCTTGATAGACAAAACGTGTAAGTGTCATAACCCTTTGTTAAACACAGAGCTTATTTTTTGCGATTTTCCAAAAGTCTATGGGAAAAATGCATAGGTTTTCGATCGAGGGAACCCGTGTGCCGCTAACTTCCGGGTTGGCCTACAAAAACACGTCATCCCTGAGGTACTCCTTGACGAAAGCTGCATAATGGAATCAGTTCTCGTGACTGACCACTAGAGGGGGGCAGAGCAGCATTTGCATCTGGCCTGTTTATGCGCTAATGTACTACCTTGCAAATGTATAAAGTTACATTGTTGTGCAACACTTATAAATAAA

Function


symbol description
plekhb1 Predicted to be involved in regulation of cell differentiation. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PLEKHB1 (pleckstrin homology domain containing B1).

NR:

description
LOC566659 protein, partial

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
CI01000304_17722987_17728462.mRNA True 2429 mRNA 0.40 6 17721207 17728565

Neighbor


gene id symbol gene type direction distance location
CI01000304_17705069_17711334 DNAJB13 coding downstream 8740 17705033 ~ 17712467 (-)
CI01000304_17673830_17688501 RSF1B.1 coding downstream 32706 17671998 ~ 17688501 (-)
CI01000304_17652862_17661953 SLC1A3A, SLC1A3B, SLC1A3 coding downstream 58955 17651127 ~ 17662252 (-)
CI01000304_17614848_17642103 NIPBLB, NIPBL coding downstream 79104 17614725 ~ 17642103 (-)
CI01000304_17613042_17613658 NA coding downstream 107154 17612666 ~ 17614053 (-)
CI01000304_17748958_17752035 DHRS13A.2 coding upstream 19821 17748386 ~ 17752035 (-)
CI01000304_17753888_17759116 DHRS13A.1 coding upstream 25158 17753723 ~ 17759116 (-)
CI01000304_17761838_17774880 PHF12A coding upstream 32985 17761550 ~ 17774880 (-)
CI01000304_17776984_17798369 NA coding upstream 48348 17776913 ~ 17798369 (-)
CI01000304_17837247_17882808 MYO18AA coding upstream 108682 17837247 ~ 17883960 (-)
G429202 NA non-coding downstream 17064 17659874 ~ 17704143 (-)
G429220 NA non-coding downstream 152390 17565702 ~ 17568817 (-)
G429238 NA non-coding downstream 156809 17564100 ~ 17564398 (-)
G429216 NA non-coding downstream 191496 17529318 ~ 17529711 (-)
G429266 NA non-coding downstream 197492 17523382 ~ 17523715 (-)
G429300 NA non-coding upstream 92195 17820760 ~ 17821223 (-)
G429301 NA non-coding upstream 93594 17822159 ~ 17822403 (-)
G429303 NA non-coding upstream 96877 17825442 ~ 17825664 (-)
G429305 NA non-coding upstream 99436 17828001 ~ 17828552 (-)
G429316 NA non-coding upstream 171101 17899666 ~ 17899895 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 853969 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 940248 16769417 ~ 16780398 (-)
G427376 NA other downstream 2459802 15258964 ~ 15261405 (-)
G427423 NA other downstream 3359315 14361448 ~ 14361892 (-)
CI01000304_14286960_14294449 NA other downstream 3433603 14286960 ~ 14294449 (-)
G429331 NA other upstream 195298 17923863 ~ 17924684 (-)
G429499 NA other upstream 509154 18237719 ~ 18238319 (-)
G429673 NA other upstream 857877 18586442 ~ 18591856 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location