CI01000304_18419836_18444486 (USP25)


Basic Information

Item Value
gene id CI01000304_18419836_18444486
gene name USP25
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 18419074 ~ 18444486 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_18419836_18444486.mRNA
CACCAGCAGACATTACTGAACCAGCTGAGGGAAGTTACTGGAACTACAGATGTTCAGCTGTTACAGCAAGCACTGCAGGTCAGTAACGGTGATCTAGCCGAGGCGGTTGCCTTTCTCACCGAGAAGAACGCCAAGGTCCCACAGCAAGATGAAGCCACCTATTACCAGACGGCCCAAATCACCAATGATAGATACATCAGTGTGGGCAGCCAGGCTGACACAAATGTAATTGATCTCACTGGAGATGATAAAGATGACCTTCAGCGGGCCATTGCTCTCAGTCTGGAGGAGTCGAACAGGGCCTTCAGAGAGACAGGCATCACTGATGAAGAGCAGGCTATCAGCAGAGTCCTGGAGGCCAGCATCGCTGAGAACAAGGCCAGCCTGAAGCGCACGCACACAGAAGTATGGAGCGATTCACCCAACCCTCACGACAGGAAGAGGATGGAGAACTGTCCTGTAGGGCTGAAGAACGTGGGGAACACATGCTGGTTCAGTGCAGTTATACAGTCTCTTTTTAACCTGCTGGAGTTCCAGAGGCTGGTGTTACATTATTCCCCCCCTGCACGGATGCAGGACTTGCCCCGCAATCAGAAGCTGTTAAACTGTCACACGAGCTGTTCCAGACTGCGTTTTAAAGTGGAAAAAGTAGTGGACAGTGTCTGGCTCAGTAGGCCAACTGCTGTCTGTGTGATTGCTGTCTTCGGGTCTTTCTCTGAGGACCCTGAGTCTGCGAACGGGGAGCACAGGAACCTGCCCTTCATGCAGGAGCTGAGGCGCCTCTTTTCCTTGTTGGTGGGATCCAAGCGGAAGTATGTGGACCCGTCCAGAGCCGTGGAGATCCTTAAGGACGCCTTCAAGTCCAGTGAGTCTCAGCAGCAGGATGTGAGCGAGTTCACCCATAAACTCTTGGACTGGCTGGAGGACGCGTTTCAGATAAAGGCAGAGGAGGACAGGGAGGGAGAGAAGCCGAAGAACCCTATGGTTGAGCTTTTTTATGGACGTTTCCTAGCTGTGGGCGTCCTGGAGGGAAAGAAATTTGAGAACACTGAGATGTTTGGGCAGTACCCTCTCCAGGTTAATGGCTTCAAAGATCTGCACGAGTGTTTAGAGGCAGCCATGATTGAAGGAGAGATCGAGTCTTTGCATTCTGCCGAGAACTCCGCCAAATCAGGGCAAGAGCACTGGTTCACAGAACTCCCACCGGTTTTGACCTTTGAACTGTCGAGGTTTGAGTTTAATCAAGCCTTAGGTCGGCCTGAAAAGATTCACAACAAGTTGGAGTTTCCCTCCATGCTGTACATGGACAGGTACATGGACAGGAACAGAGATATCACACGGATAAAACGAGAGGAGATCAGAAGACTAAAGGAGCACCTGACCGTACTCCAGCAGCGACTTGAGAGGTATCTGAGCTATGGCTCAGGGCCCAAGCGGTTTCCTCTGGCCGATGTTCTCCAGTATGCCATGGAATTTGCGTCCAGCAAGCCTGTGTGCACGTCGCCTGTGGAAGACATTGATACAACAGCACCACCTGGTGGCATGACTGCACAGCTGCCACCTCCAGCAAGGCAATCTCGTGTGCCGCCGGATCTACCCATGCACCCTGCCCCACGACACATCACAGAGGAGGAGCTGCGGGTACTGGAGGGCTGTCTGCACCGCTGGAGGAGCGAGGTGGAGAACGACACCAGAGATCTGCAGGCCAGTATATCCAGAATCCACAGAACCATCGAGCTTATGTATTCTGACAAGTCCATGATGCAGGTGCCGTACCGGCTGCATGCTGTTTTGGTCCACGAGGGTCAGGCTAACGCAGGTCACTACTGGGCATACATCTACGACCCACATCACCGACAATGGATGAAGTACAATGACATTTCAGTGACAAAGTCATCCTGGGAGGAGCTGGTGCGAGACTCGTTCGGTGGATACCGCAATGCCAGCGCATACTGCCTCATGTACATTGATGATAAAAAACCCTTCCTTATTGAAGAGGAGTTCGATAAAGAGACGGGGCAGATGCTCAGCGGCTTGGACAAACTCCCTCCTGATCTAAAGGAGTATGTGGAGGCAGATAACAAGCTCTTTCAGAAGGAGATGGAAGAGTGGGATGCTCTACAGGCCCGCAAACTCCAGCAGGAGAAACTGGCTCTGGCTGCTGCTGCCGCCAGTGTGGCCGCCCAGCCCATGAGCACTGAACCCTGCCCTCCAGACAATACTGCCCCCCAGCATGACCCAGAGTACATGGAGCAGCAGTCGCCCACCGGAGACTCCAAACACCTGCAGGAGGACACGGAGAGAGCCATCAGCAAAGCCGCAGCTGAGCATGATGAGAAGAGTCCAGAGGCCCTGCTCAACACAGTAAGACATACACAAACACATGATGAACCAGATCTGGGTCCTTCAGATGGTTCTGGAGACCAAAGGTCTCAGTCATCTCATCCCGACAGCGAGGTGACCTCTGACCCTTGCCCTCCACCTGACCCTGAGCAGGACGACTCCGCCTCTCCGCCCGCACCTCAGCGGGTGGTGGAGGTGGCCATTCCTAATGTAGGAACCTTCGTCATTCAGTCGAAGGAGGGAGGTTATGATGATGAGGCAATGATGACCCCAAACATGCAGGGTGTCATAATGGCCATTGGCAAATCCAGGAGTGTTTATGACAAGTGTGGGCCTGAAGCAGCGTTCTTCAAGGCAATGAAAGTAGAGTACACTCGTTTACTGAGGTTCGCTCAGGAGGACACGCCCCCTGAGAGAGACTACCGGCTGCAGCACGTCATTGTTTACTTCATACACAACCAGGCGCCCAAGAAGATCCTGGAAAGAACTTTGCTGATGCAATTCGCAGACAGAAACCTTGGCTTTGATGAGAGAAGAAGGGAAGCCTATTCCAAAGGCCAGTTCCATCTCAAACCTCCCAGACTGACACAGAGAGTGATTATCAGCTCGTCACAGCAGTCGCTGCTGTTTCTGATCATTGTGTTACCAAACAGCTTCCTGTCTGCACGCCCGAAAGGCTTTTGTCTCGCTACACAGTCTTGTGTCTCCAGAGCAGACTGCACGCTCCGGTGTAAGAGCATCATGAAGGTGGCACGTGCTAAACTGGAACTCATTAAACCTGACGAGGTGAACATGGAGGAATATGAGATGTGGCATCGGGATTACAGGAATTTCCGTGAGACGACAGTGTTCCTGTTGATCGGCCTAGAATTATTCCTAAAGAAAAGTTACGTGGAAGCGTTGCTGTACCTGATCTACGCCTATCAGTACAACAAAGAGCTCCTGGCGAAAGGGCCGTACAGAGGTCATGATGAGGAACTGATTGCTCATTACCGCAGAGAATGCCTGCTAAAGTTGAATGAGCACGCGGCCGCCCTGTTTGAAACAGGTGAGGAGACGGAGGTGAACTCGGGCCTGAGCATCATGAACGAGCTGGTTGTGGCCTGTATTCCACTACTGCTAGTGGATGAGATGGAGGAGAAAGACATGGTGGCTGTGGAAGACATGAGGAACCGATGGTGCTCATACCTGGGACAGGAAATGGAGCCTAATCTGCAGGAGAAGCTCACTGACTTCCTGCCCAAGCTGCTCGACTGCTCGACCGAGATCAAAAGCTTTCACGACCCGCCCAAACTCCCCTCGTACTCCACGCTGGAGCTGTGCGAGCGTTACGGTCGGGTCATGACGTCACTCACCCTGAGCCGGACCCCTGCAGACGGCAGATGAGCTGCTCAGACTTCATCTCTTCTCCACTAACACATGCCTTCCTTAAAGCAGGGCTTTCCCAAACCTACCGACCTTTCCTTTCTCTTTTGCTGCTAGAGATTTTAACTTTATCCTTATTGGTATTATTAATATTATTTTGAGGATTCTGTTATATTTTAAAGCTAATGCAACTGCAAGGACGGTGTGAAACTGAGCAGAGACAAAGAGGTATAGTTCACACAAAAATAAAAGTTTGGTCATCATTTACTCACTTCATGTTGTTCAAAACCTGTATGAAAAGGAGATATGTAGCAGAATGTTGAAGTGGATGGGGACCAGACTTAACCGTGGTCACCATTTACGTTAATTATATTGAAAACAAGAAAGTCATACGGGTTCTGAATGACATCAGAAATAATGGTAAATTTTCATTTTTGAGTGAACTATCTTTTCAAAGCAGTTCTTTAGACATTGGTGCATGCAGCTTTAGCTTTGTGAAACGAGGTTGAGGATTCATTTCAATATTTCGTTTTATTTTAGTTTTATTCCCCCACCCATCATCCCTTTCACATCAGAAGCAGATCAACCTGCCACGCCGCCCTCAGTCTGTTACAGTGTTACTGCATTGTTTGGTTTTGTTTTTCTAAGGACAGTGAGACAAAAAGCTGGAGGTTCTCGGACGGGTCTGTGGACCTGACAACTGGGACTTTAACACAAGTTTTAAGTGCTGTGGTTGGCAGCCATGGGACATACTGTGGCTTGTTAATACATTGAGAGAATAAA

Function

symbol description
usp25 Predicted to enable cysteine-type endopeptidase activity and thiol-dependent deubiquitinase. Acts upstream of or within cranial skeletal system development and dorsal/ventral pattern formation. Predicted to be active in cytosol and nucleus. Orthologous to human USP25 (ubiquitin specific peptidase 25).

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K11849 USP25; ubiquitin carboxyl-terminal hydrolase 25

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_18419836_18444486.mRNA True 4491 mRNA 0.50 27 18419074 18444486

Neighbor

gene id symbol gene type direction distance location
CI01000304_18356754_18371739 NA coding downstream 45142 18349995 ~ 18373932 (-)
CI01000304_18343532_18348936 NA coding downstream 69441 18343281 ~ 18349633 (-)
CI01000304_18021327_18022049 NA coding downstream 396965 18021051 ~ 18022109 (-)
CI01000304_18018841_18019759 NA coding downstream 398580 18018841 ~ 18020494 (-)
CI01000304_18010568_18011800 NA coding downstream 407240 18010254 ~ 18011834 (-)
CI01000304_18456463_18461381 NRIP1B coding upstream 11875 18456361 ~ 18461381 (-)
CI01000304_18481215_18483117 NA coding upstream 36638 18481124 ~ 18484668 (-)
CI01000304_18541563_18569559 GDPD5A coding upstream 96792 18541278 ~ 18569559 (-)
G429705 NA non-coding downstream 5978 18412884 ~ 18413096 (-)
G429686 NA non-coding downstream 31208 18380955 ~ 18387866 (-)
G429697 NA non-coding downstream 87042 18331736 ~ 18332032 (-)
G429688 NA non-coding upstream 21293 18465779 ~ 18476268 (-)
G429710 NA non-coding upstream 81595 18526081 ~ 18526328 (-)
G429711 NA non-coding upstream 81935 18526421 ~ 18526623 (-)
G429685 NA non-coding upstream 95125 18539611 ~ 18540344 (-)
G429499 NA other downstream 180755 18237719 ~ 18238319 (-)
G429331 NA other downstream 494390 17923863 ~ 17924684 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 1551836 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 1638115 16769417 ~ 16780398 (-)
G427376 NA other downstream 3157669 15258964 ~ 15261405 (-)
G429673 NA other upstream 141956 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002964 usp25 coding NC_007121.7 CM002894.2 38168158 ~ 38243851 (-)
bowfin (Amia calva) AMCG00016239 usp25,LOC107653727 coding CM030122.1 CM030122.1 13212058 ~ 13247016 (+)