CI01000304_18481215_18483117


Basic Information

Item Value
gene id CI01000304_18481215_18483117
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 18481124 ~ 18484668 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000304_18481215_18483117.mRNA
AATTATTATTTACATACACTAGAATAGATCTCTATATGCCCATATAATTTGCTTTTGGAAGAATTTGAGGAAAAATACACCACTGTTCAAAAGTTTAGAATAACTGAGATTTTGTTTTTGAAAGAAATCTCTTATGCTCACCCAGGCTTCATTTATTTAATCAAAAATACAGTAGAAACAGCAATATATTATTGAAATTTAAGAGAACTGTTTCTATCTTAACATATTTTAAAATGTAATTTATTCCTGTGATGACATGCTGAATTTTCAGCATCATTATTCCAGTCTTCAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGAATTGGTGCTCAAGAAACATTATTGTCAATTATTATCAATATTATCAATGTTGAAGACAGTTGTGCTGCTTAATGATTTCATGGAAACATATATTTTTCAGGATTCTTTGATTAAAATTTCAAAAGAACAGCGTTTATTTGAAATAGAAATATTTGTAACAGTAATAATTTTTACTGTCACTTCTGATCAATTTAATGCATCCTTGATCAATAAAAGGTTTAATTTCTTTTTTTTTTTAAATCTTACTTACCACAAACTGTAGTGTATCATGATTTCCACAAAAATATTAAGCAGCAAAAACTGTTCTCAACACTGATAATAATAAGAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGATGCTGAAAATTCAGCTTTGATCACAAGAATAAATTACATTTTAAATAGAAAACAATTGTTTTAAACTGTAATAATATTACACAATATTACTGTTTTTACTGACATTAAACATATATATATATATTCCAAACTTTTGACTGATAGTGTATTTCAGTTCAAAATTAAAATCTCTGCCTTTTGATTGTGGCATCTTGGCAAATCTGAGCATGTTTTGAGACATTGAGATCTCTTCAGAAATTCAAGTGGCAACCTTTTGATATTACTAGTCTTCATCCACTCTCCATTCCTTCTCATTACTGTCTAGGAGAAACAACTGAGATAAACTGAGAACTTTTGTGACTTTTCTTTGATATGGATTACATGTTTTAACAAGTTTAACATATGGTATATGTTACCATATCTCAAAAATCTGTAAAATACCTGTGATTCTTTAAAGATGGTTATCAGCAGGCTGAATTGCAGATGGTATATTGTCCATAAAAAATATGTCAGGAATGGAGGCCAATGTATGACTGGGAAAAAAACAACAACAAAAAAAACATACTTAAACACATGTGTATCTGTTCTGAGGTCAAAGGTTGAAGTTCCATGAACCATGGTTCTGTGAAAAGCTTTGGAACACAGGTCACCGACTCGAGATGGTGAAGGAATGAAGGGCGGATATTGTATCTCCATTCATGTGGCATTTGGGGTCAAAGTTCAAAGATGAAAGGTCCCCTAAGTTCAAAGGTCAACTTGAATACGGCATTATCAGAAGCCATAAAGGCTCTCCTTTCCTCAGATTACTCCAGATTATTAAGGGTGAGAGGTGAGCTGACGCACGGTCTTCCTGTGCGCGCGCACGCACGTATACACAAAGCGCCTCCTGTAGCTTTAAGCTGCGCTCACTCAGTCAGGGAGGGCAAGAGAGAGCAGGAGGAGGAGTGTGAACATTGCGGAGTTCTCGGGGATTCCGAGAATATACAGTTCAGACTCAGACCCGACAGTCGGTGCGGGAGCCCGATGAGTTTTTGGACTCTACTTCCATTTGGCGCGTTTCACGGCGCACGTCTGCGCGCAGGAAACGCTCACGCTCGGATAGCGGAATCAGGAGGTGCTGAAAGAAAAACCGACGCGTACGGAATACATTTGGAGACATCTGAAGAGATGGGAGAGAATCAGGCTGACAGCATTATGTGGCTTCTTTAAGATTGATACTGACTTGTAGTGATGTTATCGTTGCTAGAGAAATGAAAACGAACACATGGTGACCTAATTTCTCAGAGGGGATGTCAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000304_18481215_18483117.mRNA True 2125 mRNA 0.34 4 18481124 18484668

Neighbor

gene id symbol gene type direction distance location
CI01000304_18456463_18461381 NRIP1B coding downstream 19743 18456361 ~ 18461381 (-)
CI01000304_18419836_18444486 USP25 coding downstream 36638 18419074 ~ 18444486 (-)
CI01000304_18356754_18371739 NA coding downstream 107192 18349995 ~ 18373932 (-)
CI01000304_18343532_18348936 NA coding downstream 131491 18343281 ~ 18349633 (-)
CI01000304_18021327_18022049 NA coding downstream 459015 18021051 ~ 18022109 (-)
CI01000304_18541563_18569559 GDPD5A coding upstream 56610 18541278 ~ 18569559 (-)
G429688 NA non-coding downstream 4856 18465779 ~ 18476268 (-)
G429705 NA non-coding downstream 68028 18412884 ~ 18413096 (-)
G429686 NA non-coding downstream 93258 18380955 ~ 18387866 (-)
G429710 NA non-coding upstream 41413 18526081 ~ 18526328 (-)
G429711 NA non-coding upstream 41753 18526421 ~ 18526623 (-)
G429685 NA non-coding upstream 54943 18539611 ~ 18540344 (-)
G429499 NA other downstream 242805 18237719 ~ 18238319 (-)
G429331 NA other downstream 556440 17923863 ~ 17924684 (-)
CI01000304_16854877_16860888 YPEL2A, YPEL2B, YPEL1, YPEL2, YPEL1.L, YPELD, YPELC other downstream 1613886 16854565 ~ 16860911 (-)
CI01000304_16769537_16780398 SUPT20, SUPT20H other downstream 1700165 16769417 ~ 16780398 (-)
G427376 NA other downstream 3219719 15258964 ~ 15261405 (-)
G429673 NA other upstream 101774 18586442 ~ 18591856 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_002965 nrip1b coding NC_007121.7 CM002894.2 38256556 ~ 38316161 (-)