Gene
RNA
| Item | Value |
|---|---|
| gene id | G417907 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 45537 ~ 45789 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU480043 | True | 253 | lncRNA | 0.40 | 1 | 45537 | 45789 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_00047400_00073206 | NA | coding | downstream | 533 | 46322 ~ 73338 (+) |
| CI01000304_00292894_00306187 | PHAX | coding | downstream | 247105 | 292894 ~ 306479 (+) |
| CI01000304_00308220_00310793 | NA | coding | downstream | 261884 | 307673 ~ 311267 (+) |
| CI01000304_00315935_00342330 | LMNB1 | coding | downstream | 268953 | 314742 ~ 342531 (+) |
| CI01000304_00370333_00419672 | MEGF10 | coding | downstream | 324544 | 370333 ~ 420755 (+) |
| G417904 | NA | non-coding | upstream | 19293 | 26033 ~ 26244 (+) |
| G417900 | NA | non-coding | downstream | 41171 | 86960 ~ 89259 (+) |
| G417937 | NA | non-coding | downstream | 89057 | 134846 ~ 135133 (+) |
| G417939 | NA | non-coding | downstream | 91345 | 137134 ~ 137631 (+) |
| G417941 | NA | non-coding | downstream | 93424 | 139213 ~ 139451 (+) |
| G417942 | NA | non-coding | downstream | 93743 | 139532 ~ 139853 (+) |
| G417987 | NA | other | downstream | 180914 | 226703 ~ 227853 (+) |
| G418059 | NA | other | downstream | 512303 | 558092 ~ 564451 (+) |
| G418116 | NA | other | downstream | 826881 | 872670 ~ 875249 (+) |
| G418981 | NA | other | downstream | 2046705 | 2092494 ~ 2093678 (+) |
| G420445 | NA | other | downstream | 4257547 | 4303336 ~ 4303832 (+) |
