G417944


Basic Information

Item Value
gene id G417944
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 140818 ~ 141241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480084
GTAGAAATTTTTACCCTGGAGGCTAACGTTTAACCAGACAATACCAGTCGGAGTGCAAACAGCACTGTTGGCAAGCTGAATTGGGGAAAAAGTCCAAGGTTGAACCTTCTGAGAATGTTGCAAGACATCAGAAATCATGTTTGTAAGAACTGCCGAAAGTGAGGCACCTGTGTCCAGCGCTGCGTCAATGGCCTTGAGACAGAAATTAACTTTAATAATAAACGGTGTGTTCCAAAATGAAGGAGAAGAATGGTCCTCCACATGTCCAAGGACAAGTGACTCAGGCGGGGAAACAAGATAGGGGTGAGGCGCATTTATCTTTTGGAGGGAGGATTGCCTCGTTGAAACGCCCTCCCTCCCCTGAAGTTTACCTGCTGCTGAACAGAATTTTGTTTTTGCTCCTCCATTTCTGCATATGTCGTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480084 True 424 lncRNA 0.46 1 140818 141241

Neighbor

gene id symbol gene type direction distance location
CI01000304_00047400_00073206 NA coding upstream 67480 46322 ~ 73338 (+)
CI01000304_00292894_00306187 PHAX coding downstream 151653 292894 ~ 306479 (+)
CI01000304_00308220_00310793 NA coding downstream 166432 307673 ~ 311267 (+)
CI01000304_00315935_00342330 LMNB1 coding downstream 173501 314742 ~ 342531 (+)
CI01000304_00370333_00419672 MEGF10 coding downstream 229092 370333 ~ 420755 (+)
CI01000304_00424703_00434890 PRRC1 coding downstream 283462 424703 ~ 435066 (+)
G417943 NA non-coding upstream 347 140143 ~ 140471 (+)
G417942 NA non-coding upstream 965 139532 ~ 139853 (+)
G417941 NA non-coding upstream 1367 139213 ~ 139451 (+)
G417939 NA non-coding upstream 3187 137134 ~ 137631 (+)
G417937 NA non-coding upstream 5685 134846 ~ 135133 (+)
G417945 NA non-coding downstream 313 141554 ~ 141798 (+)
G417946 NA non-coding downstream 849 142090 ~ 142486 (+)
G417960 NA non-coding downstream 18853 160094 ~ 161259 (+)
G417962 NA non-coding downstream 21305 162546 ~ 163329 (+)
G417963 NA non-coding downstream 22979 164220 ~ 164672 (+)
G417987 NA other downstream 85462 226703 ~ 227853 (+)
G418059 NA other downstream 416851 558092 ~ 564451 (+)
G418116 NA other downstream 731429 872670 ~ 875249 (+)
G418981 NA other downstream 1951253 2092494 ~ 2093678 (+)
G420445 NA other downstream 4162095 4303336 ~ 4303832 (+)

Expression


Co-expression Network