G417962


Basic Information

Item Value
gene id G417962
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 162546 ~ 163329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480106
TTTCTGGAAGTACATACCCAGGATACGAGTAACACTTGCCTTTGTATGTCATTTTTGCATAAAACTGACCTAGGCATTTGAGTCTGCCTCCTGGGGTGACAAGTGAAGCTTCCGCTGTGTAGTTCTTTCTTTGGCACGAGCTATTCAAATGTTTCCTCACTTATCACACATGCATCAGCTCCTGTATCAGTTTTGAAGTTAAGTGGTGTCTGACCAATTTTCACTTGAACTGTCTAGTGTTCCTCATTTGTTTTCTTTAGTATCAGCTCCCAAGAACAGTGTATTTTCAATTTCTTCTGTTATTTCTCTTACAGCCTTTGTTTTACACATCCTCTGCCAATATCCTTTTTTTTTAAATTCTATTTATTACATGTCCATTTTGTTCCAGGGCATATTTCGTGTTTTGAGTGCTTTCCTACCACATGTATTCCAATACCTAAAGCAGGACGCCCTCTTTTGTGTTGCTGCACCCCGTGGTCTGTGTGTGTCTCCCCCTCCCTCTTGTGACTTATTGGATGAGCTTGTACCACATTTCAAGCTTTTGCAGACCAACTTGCACTGTAATGTCTTATGATTGTCTGACACTGTTGTATTGCCTCTCATAGTGTCAATGTAGACATCAATTGTAACTTCTGGGAAAGTCTTTTGTCCCTTATCCCAACCACCGGCCAGTCACAAATGTGCTCATCTCTTTTGTCACAGAACTCACAATAAGCGGCAAGTTCATAGCGAATATATGTCACTGCTTTCTCCTCCAGTAGCTGGTTTCTCTGATAGAAGTATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480106 True 784 lncRNA 0.41 1 162546 163329

Neighbor

gene id symbol gene type direction distance location
CI01000304_00047400_00073206 NA coding upstream 89208 46322 ~ 73338 (+)
CI01000304_00292894_00306187 PHAX coding downstream 129565 292894 ~ 306479 (+)
CI01000304_00308220_00310793 NA coding downstream 144344 307673 ~ 311267 (+)
CI01000304_00315935_00342330 LMNB1 coding downstream 151413 314742 ~ 342531 (+)
CI01000304_00370333_00419672 MEGF10 coding downstream 207004 370333 ~ 420755 (+)
CI01000304_00424703_00434890 PRRC1 coding downstream 261374 424703 ~ 435066 (+)
G417960 NA non-coding upstream 1287 160094 ~ 161259 (+)
G417946 NA non-coding upstream 20060 142090 ~ 142486 (+)
G417945 NA non-coding upstream 20748 141554 ~ 141798 (+)
G417944 NA non-coding upstream 21305 140818 ~ 141241 (+)
G417943 NA non-coding upstream 22075 140143 ~ 140471 (+)
G417963 NA non-coding downstream 891 164220 ~ 164672 (+)
G417901 NA non-coding downstream 5191 168520 ~ 268210 (+)
G417984 NA non-coding downstream 59686 223015 ~ 223919 (+)
G418024 NA non-coding downstream 113932 277261 ~ 277982 (+)
G417987 NA other downstream 63374 226703 ~ 227853 (+)
G418059 NA other downstream 394763 558092 ~ 564451 (+)
G418116 NA other downstream 709341 872670 ~ 875249 (+)
G418981 NA other downstream 1929165 2092494 ~ 2093678 (+)
G420445 NA other downstream 4140007 4303336 ~ 4303832 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G113559 NA non-coding NC_047601.1 CM018547.1 11711769 ~ 11712005 (-)