G418291


Basic Information

Item Value
gene id G418291
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 178125 ~ 251292 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480468
CCCGACTCTTAATGCATCGTGTTTCCTTCTGAAGCACCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCACAGTTGTCCTCCATGTGAAAAGATGGATCTCAAAATCATTCAGTCACTGTTGTAAAGGGTTCAAAAAAGAGTTTTTGGGACCTGGAGATTTTTTCTGAAGAGCAGAGCTCAGTTTAACTGCTCAGGACAAACAAGGGACTCATGAACAACCATCACGCAACAAAAAAACAGTCGTAGATCATCCAGGTAACCAAACACAGTATTAAGAATCAATGGTTCACAAAATATATATATATATATANNNNNNNNNACACACACACACACACACACACAGTGCACAGCATAAATGAGTACACCCCCTCTGAACAAATACAAAAGATGTATTTTCTTAATGATCACTTACACAATTCATGGAAATATGGCAAAATTTAAATGTATTAAACATACATTTCATAAAAACAGAGAAATATTCCATTAATATCAATAAAATAAGTAAATGATCCAATTTTGTTTAAATGAAGGGCTGCAGAAATGAATACACCCTACATCTAATTCAACAAATTTTAAGATTGGGTGAAATACGTGTCCACAGAAGGTTTTTCACCTTGGGAGAATGCATATCATCGTCATGTTGAAAAAATGCCCAACAACACAGGGAATGAGGATCAACACAGGGAGTGTAGCATCTTCTGTTTTAAGTTTTTGTATTACATCACACAGTGGTGTGTGTGAATTAATGACAGCACTGATAAAGCACAACTCCCTCACACCTCCAGCACTCATACATCCCTATATAAGAGCTTTACTACCACTGAACTTCACTGTGGGAACCAGGTTCTTCTCACTCCTCTAGCAACACCATAACATTTTGGATGCTGTTGGATCCAAAATGATTGACTTTGGTCTCATGAGACCAGAATATGGATTCCTAGAAGTCTATATTTTGTAAATATGGACCTTGGAAAAGGCTAATTGACTTTGTGCCTTGGCTACAGTGGGGTAGTTCCAGTGTGGACAACAACCATGCATGTCACTTCTGCAGGCTGCATCTTACTCTGAGATAAACAGTCAATCTTCATAGCTTTTGCTTGCTCTGAGACACTCACTTGGTATTTCTCCTGCTCTTTGTCTAGCAAAAAACCCACTCATCACTAAATGAAAGCTTAAAAATGAAGGCGTGATTATTTCAGGGGCCTTGTCACAAGCACCATAACTTTTGGCGCTCTAGCAGTTAATAAACAGAACTGCATGCGTCTTGTGGAAGAACGTTGTAGCCGGAGCTACTTCTCTCTGTTTATGTCTATGATGAGTCACACAGTTACTGTGTTACTCCGCAGCGATTCCTACCAGACCAGTCTAAAATAGTCTGAATATAAACAACTTATTATATAGGTGTACCATAATGATTCAGGGTAAGACAAAAACACAGTTTGGAAAATGGATTCATGTTGTACATTCTCATTATATAATTTTTGTAAATTTTGAACACAAAAAAAGTTACGGACAGCAGCTTTAAAGGGTTAGTTCACCCAAAAATGAAATTTCTGTCATTAAGTACTCACCATCATGTCGTTCCACACCCGTAAGACCTGCGTTCATCTTCGGAACAAAAATTAAGATATTTTTGATGAAATCCGAGGGTATCTGATCAACACATAGGCAGCAACGTCATTGTACCTTTTGACGTCCAGAAAGGTTGTTTAAAAACATGGTTAAAACAGTCAATGTGACTACAGTGGTTCAACCTTAATGTTATGAAGCGATAAGAATACTTTTTGTGCGCAAAAACAAAACAAAAATAATGACTTTATTCAACAAATTGAACCGTTGTCATAAGTAGTGAAATCAGTGCAGGCTTCCTTGTTTGCGTTCGAATTTTATTTAGTTTTATTTCGTAACTTTCAGGAGGGTGTACTCATCTTTGCAACACAACACTTTTATCACTTTGATAAGGAAATCTTATTTTCCTAAATAATTTTGACATGCTTCTTTGGTAATTGATCATGCAGACTTGATGGAACATTATATCTCTAAAGAACCCTAACATGTCCTCTAAGTAAAGAGTAATTGCTGAATTTGTTAAATTTCCGAGGGGGTGTACTCATTTATGCTGTGCACTGTGTATATATATCACCTGGCATGTCTGTTCAATGAAATGGGGGACTGAAGTGGGTGTGGCCTTTTGTTTGGGGGCGGAGCAGTCCTTTCAGTAAGCAAAGCCACATGGGACACAGAGTCTGTCCACTCCACACGGAGACGCGTTTAGCTGTATTTGCAAAAAAAAATTATCGTATAATCGCTTCTGTCGTTTTGGGAGCCTAAAAACTGCTATTTTTTGAAACCGGGTCCCAGAGTGGATAAATCTGAAAATAACACCCTGCGTTTTCATGTGTACAGCCAATCCGTATATTTTGTGAAACGATGATGTCATCACCCCACGTCTCGACCCTAGTCAGACACCGCTACGTCACATAACAGCAACAGCAACAATAATAGCGGACTACATGCTTGTGTTTGTGCCGCAGAAGCTAACGAGCCTATTAGCTTTACTAAAATAGCTTTAATTCTAAGCTTTATTTCTAAGCTTTACTAAAGTTTGTATATAGCGCGCAAGGTTTATGCGCATGCTCCAAGTCTTATTCTCCGTTTTTAGTGTATCTCTGTGGCAGAATTACAGCACCACATACTGATCTGGCATGTATACTACATCGTTTTGAGTCGGTTTCAGTGGTTTCATGTGTACGCAGATATTTGAGACGAGTAAAAAAAAAAAAAAAGATTGGATAAGGATGTGGGTGGCCACAGTGTCACCAACTGGCAAGATAAATATCACTTTTTAACATGTTTAAATTGAAATAACTTTATATTGAAATATGTCATTATGTTTGATTGTTTAAAGGTGCAATATGTAATATTTTCTGTCCGCTAGAGGCCTATTCAAAACAAAGGCGTAGCTTGATGACGCCAAGTTTGAGCGCGGAATCTTGGGACATGTGGTCTTCACATCACAGCCGGTGGAAAATAATCGGGATAGGACTCAGGAAGAAATCATGTTCATGGATGCGATTATTAGCGTTACTGTAGTATGAAGCAGAGCAGGACCGAGTGTTGTGGGAGCTGAACGAGGCCGCTGGAGCAATTGTGCAACACACGCCGTGAGCAGCGGAACTTTTATGATGTCACAGTCGCCGGCGCTGCTTCCACTTTTCCGGTCATGAGTATGAGGTAACGCAGCTCTGTTTAGCATATTAGATACATTTGAGTGTTGAAAATGTTATAACGTTACTCTGTGCGTTCGCTCGGTGGCTGCTGTGAGACACTTGTTGCACACTGCAGTAAGCTAGATCGATTTTAGAATATCATATTAAATGCTGGATGGCTTGTGTTCATAAATGGCATGCAATTAATTTTAAAGCATATTGTATGATGGAGAAAATCCTGTATTACTGTTAATAAAAACAAAGCTGCATCTGATTATGCTATGTTAGCTACTTCACAAAATAGTGTTTTTCTCTGAGGCATGGTAAAATCATGGTACTCGCAAAAAATCAAGAACATTATTTAAACAATAAGACTAAACGTGTTGCTATATAACAATAATTTGTTTTCTGTCTATAAATACAGGTGCTGGTCATATAATTAGAATATCAAAAAGTTGATTTATTTCACTAATTCCATTCAAAAAGTGAAACTTGTATATTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480468 True 3724 lncRNA 0.38 3 178125 251292

Neighbor

gene id symbol gene type direction distance location
CI01000304_00140443_00163606 NA coding downstream 14442 139690 ~ 163683 (-)
CI01000304_00088915_00116828 NA coding downstream 61297 88164 ~ 116828 (-)
CI01000304_00348539_00351333 NA coding upstream 97203 347671 ~ 351333 (-)
CI01000304_00670372_00671143 NA coding upstream 417984 669276 ~ 671143 (-)
CI01000304_00682765_00692613 NA coding upstream 431217 682509 ~ 692656 (-)
CI01000304_00748608_00750261 NA coding upstream 497023 748315 ~ 751532 (-)
CI01000304_00843412_00844705 HINT1 coding upstream 592003 843295 ~ 844705 (-)
G418314 NA non-coding downstream 46143 131766 ~ 131982 (-)
G418300 NA non-coding downstream 132400 45503 ~ 45725 (-)
G418295 NA non-coding downstream 151881 26033 ~ 26244 (-)
G418276 NA non-coding upstream 34023 285315 ~ 342503 (-)
G418271 NA non-coding upstream 41614 292906 ~ 306910 (-)
G418280 NA non-coding upstream 73058 324350 ~ 330891 (-)
G418292 NA non-coding upstream 97796 349088 ~ 363732 (-)
G419353 NA other upstream 1978092 2229384 ~ 2236106 (-)
G419354 NA other upstream 2011210 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 4012453 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 4410524 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 6226159 6480743 ~ 6483986 (-)

Expression


Co-expression Network