G417987


Basic Information

Item Value
gene id G417987
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 226703 ~ 227853 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480131
CCTTGTGTCAAGCCACTCTTGAACAACAGACAGCGTCAGAAGCATCTCGCCTGGGCTAAAGACAAAAAGGACTGGACTGCTGCTGAGTAGTCCAAAGTTATGTTCTCTGATGAAAGTAAATTTTGCATTTCCTTTGGAAATCAGGGCCCCAGAGTCTGGAGGAAGAGAGGAGAGGCACACAATCCACGTTGCTTGAGGTCCAGTGTAAAGTTTCCACAGTCAGTGATGGTTTGGGGTGCCATGTCATCTGCTGGTGTTGGTCCACTCTGTTTTCTGAGGTCCAAGGTCAACGCAGCCGTATACCAGGAAGTTTTAGAGCACTTCATGCTTCCTGCTGCTGACCAACTTTATGGAGATGCAGATTTCATTTTCCAACAGGACTTGGCACCTGCGCACACAGTGCCAAAGCTACCACTACCTGGTTTAAGGACCATGGTATCCCTGTTCTTAATTAGCCAGCAAACTCGCCTGACCTTAACCCCATAGAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAACGCAGAAGAGCTGAAGGCCACTATCAGAGCAACCTGGGCTCTTATAACACCTGAGCAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTAATTCAGGCAAAAGGAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480131 True 659 TUCP 0.49 3 226703 227853

Neighbor

gene id symbol gene type direction distance location
CI01000304_00047400_00073206 NA coding upstream 153365 46322 ~ 73338 (+)
CI01000304_00292894_00306187 PHAX coding downstream 65041 292894 ~ 306479 (+)
CI01000304_00308220_00310793 NA coding downstream 79820 307673 ~ 311267 (+)
CI01000304_00315935_00342330 LMNB1 coding downstream 86889 314742 ~ 342531 (+)
CI01000304_00370333_00419672 MEGF10 coding downstream 142480 370333 ~ 420755 (+)
CI01000304_00424703_00434890 PRRC1 coding downstream 196850 424703 ~ 435066 (+)
G417984 NA non-coding upstream 2784 223015 ~ 223919 (+)
G417963 NA non-coding upstream 62031 164220 ~ 164672 (+)
G417962 NA non-coding upstream 63374 162546 ~ 163329 (+)
G417960 NA non-coding upstream 65444 160094 ~ 161259 (+)
G417946 NA non-coding upstream 84217 142090 ~ 142486 (+)
G418024 NA non-coding downstream 49408 277261 ~ 277982 (+)
G418023 NA non-coding downstream 52040 279893 ~ 281026 (+)
G418047 NA non-coding downstream 212731 440584 ~ 440872 (+)
G418050 NA non-coding downstream 242362 470215 ~ 470572 (+)
G418059 NA other downstream 330239 558092 ~ 564451 (+)
G418116 NA other downstream 644817 872670 ~ 875249 (+)
G418981 NA other downstream 1864641 2092494 ~ 2093678 (+)
G420445 NA other downstream 4075483 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4945370 5173426 ~ 5176791 (+)

Expression


Co-expression Network