G418276


Basic Information

Item Value
gene id G418276
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 285315 ~ 342503 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480453
GGCTGCAGCAAAAACAAAAAACATGCAAGTGACAATTCTTAAAAGGTTAAATCAAAATATGTGTAAGGCTAGTGTTTGTTAGATAGTACAGACAAGAGTACAAAATACAACTTCAGCATCTCAGCTCAGACAACCTGATCTGTTTAAAAAAGTACAGTACTGAATCTTGAGGTTTAATAGCTTGCACACTGTAATAACTGATCATATAAGCAGGCAGTGTTGTCAGGGTCCGCTGGCATGACCAATGGCTCAATCAACAATCCTCTATGGAGGAGACGTGCTGCATCCGAGTGCCAATATGCAGTAAAAGAGAAATGCGTTTCAGACCCAAAACTGCAGCGGTTTGAGATTTGGCTGGTATATCCTATCCAATAAACACCCTAGACCTCATAGACAGAAAATATTCACTGATCAATGGAGGGAAAAAAAAAAGTCACTTCTCATAAAAAAATAATGTGCTTACAAAACAATGAAGTCTGACAGTTGGAATTGTTCAGTTGACAGGTTAGTCGAGCAATCACGTGCTGCTGAAGAGACGTTTTAGGCCCTGTGATTGTGTAGTGAATTACTTTTGAACAGCTGCTTTAAATACAATGATAAACTTTAACATTATTCAAACTACCATGCAAATGTGTCTACTGTCTGTAATAACTTCACTAAAACTATTAGCCATTATAAAAACTGTCTATAAAAAGACCTAAAATGCCATCTTATAAAATATAAACATGATAAAAAAAAAAAAGGGTTAGTCACAGAATCTGTTGCAGACAAGTTCAGAAAAACATCCTCAATCACAACTCACACATGAAAATAAAAACATTTGATTCATTAAATTTAAGCTGATAAACACTCACAAAAACTGGAGAGATTTTACAAGCATAAATCAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNAAGAAAATATACCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480453 True 941 lncRNA 0.33 2 285315 342503

Neighbor

gene id symbol gene type direction distance location
CI01000304_00167148_00268194 ALDH7A1 coding downstream 17121 167148 ~ 268194 (-)
CI01000304_00140443_00163606 NA coding downstream 121632 139690 ~ 163683 (-)
CI01000304_00088915_00116828 NA coding downstream 168487 88164 ~ 116828 (-)
CI01000304_00348539_00351333 NA coding upstream 5992 347671 ~ 351333 (-)
CI01000304_00670372_00671143 NA coding upstream 326773 669276 ~ 671143 (-)
CI01000304_00682765_00692613 NA coding upstream 340006 682509 ~ 692656 (-)
CI01000304_00748608_00750261 NA coding upstream 405812 748315 ~ 751532 (-)
CI01000304_00843412_00844705 HINT1 coding upstream 500792 843295 ~ 844705 (-)
G418291 NA non-coding downstream 34023 178125 ~ 251292 (-)
G418314 NA non-coding downstream 153333 131766 ~ 131982 (-)
G418300 NA non-coding downstream 239590 45503 ~ 45725 (-)
G418295 NA non-coding downstream 259071 26033 ~ 26244 (-)
G418292 NA non-coding upstream 6585 349088 ~ 363732 (-)
G418372 NA non-coding upstream 99469 441972 ~ 442201 (-)
G418387 NA non-coding upstream 127738 470241 ~ 470460 (-)
G418391 NA non-coding upstream 203971 546474 ~ 549437 (-)
G419353 NA other upstream 1886881 2229384 ~ 2236106 (-)
G419354 NA other upstream 1919999 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 3921242 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 4319313 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 6134948 6480743 ~ 6483986 (-)

Expression


Co-expression Network