G418280


Basic Information

Item Value
gene id G418280
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 324350 ~ 330891 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480457
GTCTCTTTCCTGCTCGTGTCCCACATCCCTCTCAAAGAGCAGAGCAGTAGGCTATATGACGCATCTTTGTGTAGAAATAAATAATATTTTTTTTTGTAAATAATATTTAACTTTCTTATTATTTACACATTGCTTTGAGAAACATTTGCCATCAATTTATGGACACAAAAGGCATGGGAATTTATCATCCTGAAACAGGACAGTGTAATTTGTCTAATATTTTTACTAGCATGACAGTTTATATCCACTGATCTGATGCTCACTACTGTAATGAAAATGAGCGTAACTTGCTCATACTTCTAAAAAGCAGGGACAATTTCAGACTCCAATAAATGACCATTTACATGCTTAGGATGTTTGCATTGTGAGTATAGGGAGACTTCAGACATTAAATTCTGACTTGTTTACTCATTGAAATCAGATGACTTCTGTAACGACTGAGACAAATCAGACACAATTATTTGTTATAGGTAACCAATAATTGTTTAAAGCACTCTGGGGCCTGTCCCCCATCCCCCGAGAAGTTCTCTGTTACAAGTTTTATTGCGCTAAAGAATGTGGTTGCCACATGGAAGAGCAGAGAAGAGACACAGAAACGTGCATCTTTCCTGCATTTTCCCCACAGAACACAGACTTTCCTGCATTAATTTATAGACAGACCGTTCTATAAATAAACATGCACATCCCTAGGAAATGGTATCCATTATTGCTGTTGTTGTATTGCACTCATTGTATTCGCATGTTTTATGATACATTTAAGGTAACTTCAATTATGCCATGTTTAGTGTCTATGGGTTTGTATCGAAGATTTAAATGCTTGTGTATGCGGTATGTCCATACCTGTGCAACACATCAGTATTACAAGAATCTTTAATAGTTCTTCTTCAAAAACTCAGCCAGTAAATCTTGCTCGATCGTAAAAGCCCTGACAGGAGGCGTGTTATCGCCCGGAAATACAACATCTTCATTGGTCCGGTCAACAACTAAGAGGTGTGACTTTGACCAGAGGTTAAAAGCCAGTGAACAATGCCACTCCCTTTTTTTTTTTTCTTTCTTGCTTCTTGGACGACTGAAGAGACCCCCTTCTTGCTGCAGGCCTGTAGGCCTAGGCCTGCAGGCCTCGGCCTACAACCCAGCCATGTGCTCATCTATAAGTTGTTTCATAGTACTTCATCTAACGCAGAAGATACTGGCAACAACTTCGGACCGAACCATCCAGATTACAACCCAGCCTGCAGATCCGATGCTCCTCAGCCTAAAGGCATCTTGCAAGTATCATACATTTGAACACTAAACAGCGATTTAGTATTGATTTGTAAAACTTACCTTTGTCAGCAAAGGTGTTTTATTACTGAGGAAACTGATGATTCTTTTCCAGATTGTCTGACTTTTTCCTATAACTATCAACAGTTCCACTTCCGGCTCAACTCTATCATTGCTCATTCTTACCAACGTGTGTGTGACTTGCCTGTATGTTATGTGTTTGTGAGTTAGTTAATAAAGATTGTGCACAATACATGTTTGGTCCTGACTCCGTCTGCTAATAAATTGCCTCTTAAGTGATTTAGATCCTGACTACATGCTCTGAGAGTAGTACTGTACAATACAAATGTTGTTTTTCCATAACCTGGAAATTTCTTAGAATTAATAAACAATCAACACTGAGTGTTCACTGGACAAACAGGTTAATTGATTGTAATATTAATGTAGCTACATCCAGTTAATCTGATTAATTGTGAATATGTAAATCAGTTAATCATAATTAATAATCATAATGAGTTATGAATAATTATTGAGTAGTGCTGGGCGGTTTGACCAAAAATTTCTATCACGGTTTTTTTTTTTATTTATTTTTTATTTTTTTATAAAGATTCTGTCGATTTCACGGTATGTCGCGTTTTTTTGCACTGGACCTTTATTTTGTCATATTTTGAGTACAGGGAATATTATAAAACAACATTGTAAAAGACAATTAAAAATGAATTGTAATCAAAGTTCATAAAGCTAACAATTTAATTTAAAATGTAATCAAGTAATTTAATTATTTAATTAAATGTATTAATAAGTAGGCTACATTTTTACTGTGCAATTTCTGTCATTTCATGAAGACCTTTGAGATTGTGTTTTAATTAACGGTGATTATTATTATTATGATTATTATTATTATTATTCTCAATTAAAGTATACTCGATTGTACAATAGTATATTTCTATTATTTCAAGTTATACCGAACTTTTATTTTGACAGGGTCGTGAAGACCATTGACTTCCTGTGTATATGATATGACAAATGTCAATAGTTTTATCAAATTAAACTGTGAAATGTTCATAAAGTGACCCTAAGAGCAGCTCTGCAGATGAAGTTCATGTATAGCGAGTGAGACAGCAGACACTGAAATCATCGCGAGCGTCACGCGTGCTTCAGTGTGTGTAGTAGTTGACGAAAATCCGGCGCTCATTCATAGACTTCAGATTTCAATAGCAGTCTTTTTTAGCTTTAATATTCACAGACACTAGTCCGTATCGATTCATTGTACAGCCCGACTTTTGATTTATTCATCCAAAAATTGCCAAATTCTGTGACGTTCTGCTTTATACAGCAAGTTCTATTTGTGACTGGATTCTGTGATTTCATTCATGATTTCTGCATCGTGGAAACCATATGGCTCTACATGGTATTTGCAGTATTAAAGAGATCGTTTTGTGAGTTATTTATTGTTGTGTTATAAAGTTGTTTCCATTAGTGTAAGAAGGGTATGCAATTAATAGAAATCCGCTCTCTATACACTCTAGTCTACACAGCACTCTTCATGGCCCTTGAATAGATACAGCAGCTGTTTCAGCTACACACCCGTATGGCGGTTTTTGAAAAATACATATCGGTCTCGAAATTGAAACCGGTACACCATATGAACCGGTATGCCGCCCAGCACTAGCGGTGAGGTTGAGGTTTCTGAGATTCAGAATCCTCAATTTAAGGTTTTCTTTCCTTCACTGATAAACGAGTGTCCAGTCTTGGGATTGTCTTTCACAATCACACAGATCAGAATGAAGCTTTTAATTTTGGCACTTCAGTGTGTTGTTTTTGAGTTAATCACAGTGTGCTTCCAAATCATAAGGAATGCACATGCTCACTACTGAGGACATATATATATTTTTTTAATCTTTCAGACATTGGTTTGTTTTAGACATTTATAATGCTGAATGGGACTGACCTCCTCAAACATGTTCTTCCTGAAGTCCAGCTCCTCCACGAGGCTCTGGCAGCGGTTCTCCAGATCCACGCGCAGCAGTGTCTCATCTGACAGCTGCTTCTTAGCAGAGCTCAACCCTTCCTCCAGCTGAACGACAAACACACTACATCACAGACTGGCTCACAAACATTACTTTGTCATTGTCAGTGGAAACGAAACATGTATGCTGGAAAAGTCATGAAACAATAGACCTTTTGAAGTGACCCTACGATTGTCATAATTATTTGACTATTTTGCAGAGTGTTTTTGGTGCAGATATGGATGATATTTGCCACCTTATACTATGTCAATCTCCTACGCTTTTGTTGAGTGAACACTAGGGCTGGGTATTGACAATTTTCACAATTCGATTTGATTTCTATTTACATGCTTGCGATTCGATTCCGATTATTTTGGATGTAAATACAGTAAGTGGCAAATTTTCTAGAGGAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480457 True 3725 lncRNA 0.36 2 324350 330891

Neighbor

gene id symbol gene type direction distance location
CI01000304_00167148_00268194 ALDH7A1 coding downstream 56156 167148 ~ 268194 (-)
CI01000304_00140443_00163606 NA coding downstream 160667 139690 ~ 163683 (-)
CI01000304_00088915_00116828 NA coding downstream 207522 88164 ~ 116828 (-)
CI01000304_00348539_00351333 NA coding upstream 17604 347671 ~ 351333 (-)
CI01000304_00670372_00671143 NA coding upstream 338385 669276 ~ 671143 (-)
CI01000304_00682765_00692613 NA coding upstream 351618 682509 ~ 692656 (-)
CI01000304_00748608_00750261 NA coding upstream 417424 748315 ~ 751532 (-)
CI01000304_00843412_00844705 HINT1 coding upstream 512404 843295 ~ 844705 (-)
G418271 NA non-coding downstream 17440 292906 ~ 306910 (-)
G418291 NA non-coding downstream 73058 178125 ~ 251292 (-)
G418314 NA non-coding downstream 192368 131766 ~ 131982 (-)
G418300 NA non-coding downstream 278625 45503 ~ 45725 (-)
G418295 NA non-coding downstream 298106 26033 ~ 26244 (-)
G418292 NA non-coding upstream 18197 349088 ~ 363732 (-)
G418372 NA non-coding upstream 111081 441972 ~ 442201 (-)
G418387 NA non-coding upstream 139350 470241 ~ 470460 (-)
G418391 NA non-coding upstream 215583 546474 ~ 549437 (-)
G419353 NA other upstream 1898493 2229384 ~ 2236106 (-)
G419354 NA other upstream 1931611 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 3932854 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 4330925 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 6146560 6480743 ~ 6483986 (-)

Expression


Co-expression Network