Gene
RNA
| Item | Value |
|---|---|
| gene id | G418387 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 470241 ~ 470460 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU480576 | True | 220 | lncRNA | 0.44 | 1 | 470241 | 470460 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_00348539_00351333 | NA | coding | downstream | 118908 | 347671 ~ 351333 (-) |
| CI01000304_00167148_00268194 | ALDH7A1 | coding | downstream | 202047 | 167148 ~ 268194 (-) |
| CI01000304_00140443_00163606 | NA | coding | downstream | 306558 | 139690 ~ 163683 (-) |
| CI01000304_00088915_00116828 | NA | coding | downstream | 353413 | 88164 ~ 116828 (-) |
| CI01000304_00670372_00671143 | NA | coding | upstream | 198816 | 669276 ~ 671143 (-) |
| CI01000304_00682765_00692613 | NA | coding | upstream | 212049 | 682509 ~ 692656 (-) |
| CI01000304_00748608_00750261 | NA | coding | upstream | 277855 | 748315 ~ 751532 (-) |
| CI01000304_00843412_00844705 | HINT1 | coding | upstream | 372835 | 843295 ~ 844705 (-) |
| CI01000304_00852998_00861119 | PPP2CA, PPP2CB, CDKL3 | coding | upstream | 382486 | 852946 ~ 861367 (-) |
| G418372 | NA | non-coding | downstream | 28040 | 441972 ~ 442201 (-) |
| G418292 | NA | non-coding | downstream | 106509 | 349088 ~ 363732 (-) |
| G418276 | NA | non-coding | downstream | 127738 | 285315 ~ 342503 (-) |
| G418391 | NA | non-coding | upstream | 76014 | 546474 ~ 549437 (-) |
| G418441 | NA | non-coding | upstream | 109901 | 580361 ~ 580717 (-) |
| G418450 | NA | non-coding | upstream | 132693 | 603153 ~ 603576 (-) |
| G418451 | NA | non-coding | upstream | 135938 | 606398 ~ 607640 (-) |
| G418452 | NA | non-coding | upstream | 137243 | 607703 ~ 607923 (-) |
| G419353 | NA | other | upstream | 1758924 | 2229384 ~ 2236106 (-) |
| G419354 | NA | other | upstream | 1792042 | 2262502 ~ 2266241 (-) |
| CI01000304_04263955_04264962 | NA | other | upstream | 3793285 | 4263846 ~ 4265201 (-) |
| CI01000304_04661808_04672936 | PPWD1 | other | upstream | 4191356 | 4661766 ~ 4672947 (-) |
| CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | upstream | 6006991 | 6480743 ~ 6483986 (-) |
