G418003


Basic Information

Item Value
gene id G418003
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 550273 ~ 551981 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480154
ACAATTTGTGAACACCAAGTTAGAAATTTGAAAGGCTTAAAAACAGTTTTATTCAATTCAAAAAATGACAACTGTTTTCTGTGAGGCTTAGCGGATAGAAAATATGATTAGCTTCATATAAAAATTCTGTGTTTTGATCAGTCGTCACGTATTCAGACATTCACAATGCAACTTTAAGCATCTTAGAGAGCAGTTAGCTTATCATCAGACACGTTTAGACACTCTCTACTGGAGTATAATGTGGAGTGTCATGAGCAGGTCTGAAGCGAGTCGCTCATCTCTGTCTATGTCATTAGAGAGAGCAGAACTTCTGATCTGCAGTATGTAGTGTCTCACTGAGGACGTCCTGTGTGTGCTGTGCAGGTAACTGACACCTGCACGCTGTCTGATCTGGAAGAATCCATCATGGTTGCCAGCTGTGATGGTGTACATGACGTGCTTGGCGAGGGGTCTGACAGCAGGCAGCAGCTCCAGTATGGCTGCTTTGGGTTTGAGTTGCGAGCAATTGAGAAATAACTTCAGTGGCTGATCCACGTCCACACTGGCCAGACTAACTGCATCCTGTATGAACAGAAGAATATTATATTACAGCTATTAGGTTCAGTGAACGGACATCCACAACATTAATTTAGAAGAGAAATGAAACTACCAGTTCTACACATTTGTAATGAAATGCTCTTATTTTTCTCATGTCTTTTACCAGTGTAAAGTTTGAAGTGTGTCTTCTCCTGACACTTTTCTTCTGGTGTCCATTTGTTTTGCAGCCATAGCAGGTTTTATGAGAAAGAGCATTTTCTTCTGGTCCAAGCCCATCACCCCCAAAACCAGCAGCAGATACACAATGCCTGTGGGAACAGTCACTTATTCAATATCACTAATGGAAATATAAGACTAATAAATCACAAAAAATGGTGGCTAAATGTATTTCTACCCATGTCATTTACAGTTATGTATTTAGCAGACACTTTTGTCCAAAGCAACTTAAAAAAAAAAAAGAGGAACAACAGCAATTTGTCAAAGAGCCAACAATATTCACAGTACAATATAACAATAATTAATAATTATTATTTGCCAGGTTTGACAACTATAACGAGGAAGACTGTTGCATGGTGAGAATCTAAAGGATCAAGAACTATTTATTTGTTTTTCATGACAATTTTCTTTCTGAAGTTTCATTATTACTGTAATAAAAAAAAAAACAGTTCTTTTCCCTGTAATGCATCAATGATGATTTTTTTTGTATTATACAAAATAGTATACTAATCAATCAGTAAAAATGTGAAATCGTTTTTTTTAGCAAATATCCAGATATGTTTTGAGCAGGTTTCATTAGATTTGCCCAATAAATTGTAACATACATTACAATGAAATCCATATTACCTGTCCACTATTCAACTATAACCTGTCTTATTTAAATATTACACATGACTGTAGTTTGACTGCTGATATGATTCAACTGTAACACTATTTCGTGCACATCTCACCCCTGTCCTGCTCTGTAATATCCTGCAGGACATCCGCACACAAATCCACCCTGTGTGTTTGAGCAGCCGTATCTGCAGGGGCTCATGGAGGACACGCACTCATCCACATCTTCACAACTCGTGGACACGGGGTCAAAGGTGAAGCCAGATGGACAGCCACACTTAAAACTGCCCAACGTGTTAAAACAGGAAGCTGAACCACAGTTGCCCGGGTTCAAGCACTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480154 True 1709 lncRNA 0.38 1 550273 551981

Neighbor

gene id symbol gene type direction distance location
CI01000304_00480135_00531529 NA coding upstream 18236 479781 ~ 532037 (+)
CI01000304_00453663_00453991 CTXN3 coding upstream 95033 453663 ~ 455240 (+)
CI01000304_00424703_00434890 PRRC1 coding upstream 115207 424703 ~ 435066 (+)
CI01000304_00370333_00419672 MEGF10 coding upstream 129518 370333 ~ 420755 (+)
CI01000304_00315935_00342330 LMNB1 coding upstream 207750 314742 ~ 342531 (+)
CI01000304_00695426_00725459 SLC27A6 coding downstream 142480 694461 ~ 725459 (+)
CI01000304_00728178_00731945 ISOC1, ISOC1.L coding downstream 175975 727956 ~ 732274 (+)
CI01000304_00757894_00760456 NA coding downstream 205913 757894 ~ 760660 (+)
CI01000304_00772995_00827316 CHSY3 coding downstream 219052 771033 ~ 827608 (+)
CI01000304_00846138_00850133 NA coding downstream 294078 846059 ~ 850379 (+)
G418004 NA non-coding upstream 23751 521684 ~ 526522 (+)
G418056 NA non-coding upstream 71374 478679 ~ 478899 (+)
G418050 NA non-coding upstream 79701 470215 ~ 470572 (+)
G418047 NA non-coding upstream 109401 440584 ~ 440872 (+)
G418023 NA non-coding upstream 269247 279893 ~ 281026 (+)
G418058 NA non-coding downstream 5610 557591 ~ 557792 (+)
G418077 NA non-coding downstream 45305 597286 ~ 597663 (+)
G418079 NA non-coding downstream 48559 600540 ~ 600753 (+)
G418081 NA non-coding downstream 49131 601112 ~ 601378 (+)
G418083 NA non-coding downstream 51112 603093 ~ 603478 (+)
G417987 NA other upstream 322420 226703 ~ 227853 (+)
G418059 NA other downstream 6111 558092 ~ 564451 (+)
G418116 NA other downstream 320689 872670 ~ 875249 (+)
G418981 NA other downstream 1540513 2092494 ~ 2093678 (+)
G420445 NA other downstream 3751355 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4621242 5173426 ~ 5176791 (+)

Expression


Co-expression Network