G418090


Basic Information

Item Value
gene id G418090
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 619225 ~ 624190 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480256
TTTTTTTTTTTTTTTTTTTTTTTTTTATCACATAGGAGACTGTTTATTACACATTCATCAATATCTGTAAACACAGATGGCAAACCCTGAGAGGATGCTGGGTCTTGAGACACATCAGATAACATTTGACTTCTGTAATTCCACATCATAATATATCTTTTTTTTTTTTTACACTGTACAGCAATATCCTTTAGGAAACTTCAAACTACAGTGTAGACAATTTACATCAATTTGCATTAAACAAATGTATCCAGTCAAATGACAAGCAAAAAACTGTATGAACTCAACAGTGACTGCTGCATAGACACTGAACAGACAAAGCTCTGAATGTGATCTTCACAGGTGTGAGTTGTGTAGTGCGCTATCAGAAAGGTCTCACTGGAGTTACTCATCTGCGTATACTAAAGGTCAACTGACCCAGACAGTTTCTGCCAGTCTGGTCACTTTCATAGCCTCTGTTACAGACGCAGTGGAAAGTTCCTCTGAGATTCTCACACACTCCATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480256 True 505 lncRNA 0.37 2 619225 624190

Neighbor

gene id symbol gene type direction distance location
CI01000304_00480135_00531529 NA coding upstream 87188 479781 ~ 532037 (+)
CI01000304_00453663_00453991 CTXN3 coding upstream 163985 453663 ~ 455240 (+)
CI01000304_00424703_00434890 PRRC1 coding upstream 184159 424703 ~ 435066 (+)
CI01000304_00370333_00419672 MEGF10 coding upstream 198470 370333 ~ 420755 (+)
CI01000304_00315935_00342330 LMNB1 coding upstream 276702 314742 ~ 342531 (+)
CI01000304_00695426_00725459 SLC27A6 coding downstream 70271 694461 ~ 725459 (+)
CI01000304_00728178_00731945 ISOC1, ISOC1.L coding downstream 103766 727956 ~ 732274 (+)
CI01000304_00757894_00760456 NA coding downstream 133704 757894 ~ 760660 (+)
CI01000304_00772995_00827316 CHSY3 coding downstream 146843 771033 ~ 827608 (+)
CI01000304_00846138_00850133 NA coding downstream 221869 846059 ~ 850379 (+)
G418089 NA non-coding upstream 324 618605 ~ 618901 (+)
G418088 NA non-coding upstream 12267 606641 ~ 606958 (+)
G418086 NA non-coding upstream 13653 605265 ~ 605572 (+)
G418085 NA non-coding upstream 14380 604634 ~ 604845 (+)
G418083 NA non-coding upstream 15747 603093 ~ 603478 (+)
G418093 NA non-coding downstream 1208 625398 ~ 625598 (+)
G418132 NA non-coding downstream 4131 628321 ~ 628526 (+)
G418134 NA non-coding downstream 8142 632332 ~ 632665 (+)
G418138 NA non-coding downstream 13047 637237 ~ 637458 (+)
G418142 NA non-coding downstream 20070 644260 ~ 644561 (+)
G418059 NA other upstream 54774 558092 ~ 564451 (+)
G417987 NA other upstream 391372 226703 ~ 227853 (+)
G418116 NA other downstream 248480 872670 ~ 875249 (+)
G418981 NA other downstream 1468304 2092494 ~ 2093678 (+)
G420445 NA other downstream 3679146 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4549033 5173426 ~ 5176791 (+)
G421162 NA other downstream 5617043 6241233 ~ 6242997 (+)

Expression


Co-expression Network