G418148


Basic Information

Item Value
gene id G418148
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 664260 ~ 664617 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480316
ATTAGTCCTTATTTTAATTAGACTATAACGCCTTCCTGAAGGTAACAATCTGAAAAGCTTGTGTGCGGGATGATGAGGGTCACGGACAATCTTCTCCGCCTGTTTCAAGACACGTAACCAGTGCAGATCCTGAAGGGAGGGTAAATCAGTCCCTATAATGCGTTCAGCCATTCTGACCACTCTCTGAAGCTTATAGTTGTCTCGTTGAGTGGCAGAACTGTACCAGACAGTGAGTGAGGAGCACAGGACCGATTCAATCATAGCCTTGTAAACTTTACACATAACTTCTCTTGACAGGTTGCACTTCCTTAATTGACGGAAGAAGTACATCCTCTGTTGAGCTTTTTTAATAATGCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480316 True 358 lncRNA 0.44 1 664260 664617

Neighbor

gene id symbol gene type direction distance location
CI01000304_00480135_00531529 NA coding upstream 132223 479781 ~ 532037 (+)
CI01000304_00453663_00453991 CTXN3 coding upstream 209020 453663 ~ 455240 (+)
CI01000304_00424703_00434890 PRRC1 coding upstream 229194 424703 ~ 435066 (+)
CI01000304_00370333_00419672 MEGF10 coding upstream 243505 370333 ~ 420755 (+)
CI01000304_00315935_00342330 LMNB1 coding upstream 321737 314742 ~ 342531 (+)
CI01000304_00695426_00725459 SLC27A6 coding downstream 29844 694461 ~ 725459 (+)
CI01000304_00728178_00731945 ISOC1, ISOC1.L coding downstream 63339 727956 ~ 732274 (+)
CI01000304_00757894_00760456 NA coding downstream 93277 757894 ~ 760660 (+)
CI01000304_00772995_00827316 CHSY3 coding downstream 106416 771033 ~ 827608 (+)
CI01000304_00846138_00850133 NA coding downstream 181442 846059 ~ 850379 (+)
G418145 NA non-coding upstream 10357 653652 ~ 653903 (+)
G418142 NA non-coding upstream 19699 644260 ~ 644561 (+)
G418138 NA non-coding upstream 26802 637237 ~ 637458 (+)
G418134 NA non-coding upstream 31595 632332 ~ 632665 (+)
G418132 NA non-coding upstream 35734 628321 ~ 628526 (+)
G418149 NA non-coding downstream 2000 666617 ~ 667483 (+)
G418156 NA non-coding downstream 28733 693350 ~ 693603 (+)
G418180 NA non-coding downstream 261888 926505 ~ 926772 (+)
G418192 NA non-coding downstream 380299 1044916 ~ 1045411 (+)
G418195 NA non-coding downstream 382781 1047398 ~ 1047599 (+)
G418059 NA other upstream 99809 558092 ~ 564451 (+)
G417987 NA other upstream 436407 226703 ~ 227853 (+)
G418116 NA other downstream 208053 872670 ~ 875249 (+)
G418981 NA other downstream 1427877 2092494 ~ 2093678 (+)
G420445 NA other downstream 3638719 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 4508606 5173426 ~ 5176791 (+)
G421162 NA other downstream 5576616 6241233 ~ 6242997 (+)

Expression


Co-expression Network