G418424


Basic Information

Item Value
gene id G418424
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 695657 ~ 697197 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480617
ACTGAGATGAACAGAAACTTATCACATACCAGTTGTGCCTGAAGTGAAGATGTAGAGCGTGGGGGTTTTAAGACAGGCGACAGAGCGACGCTCAGCTGGGATTGGCTCCTGTGAAGCTTTCTCAATCTTATCCAGCAGGCTGTGGACGTCAGGATGAGAGCTCGCTCGATTCATACACCAAACTGTGATACTGTCCCCCTGGAGACTAGGAAGAATGTCCTCTAAAGTATCTAGAAGATCTGCTCCGACCACCAGTAGTTTGGCCCCACAGCAGTTAAAACAGTGCAGCAGCGATCTGGGTTTGATGTTCGTGTTGAGAAACGCCACGGCACAGCCCAGTTTACAGAACCCGAACCAGACCGCGATGAAATCGGGCTCGTTGCTCATGAGGAGCGCGACCGTGTCTCCTTTATTTACCTTGTCTTGAAACACGCACGCGACTCTGTTGCTGCGCTCCTCGAGCTCTCCATAGGTGTACGTCACTCCTTCATAAATCACAAAGGGTTTTTCAGGAATCCGCTTGGCTTGTTGAACAAACCTGTCTATGACCGTCACGATCTTTGAGGTTCTTTTGTAGATTTCCAGACGCGCTCCATATCGTATGACTTTCATTAAATACAGGGCGTCTTTCCAGAAGTATGGAAAACACAAGCGCTGAGCGAGATGCGCGGAGAGGATTCCTGTCAGCAGAGCCGCGATCCATGACAACATCTCTGACAAATAAACCGAACACGCACAGACTCGGTTAAAGCTGTCTAACCGTTAACATTGTTAAACTAGTTCAGGTTGGGTTGTTTAATGGATGTTATAAAACGCAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480617 True 819 lncRNA 0.48 2 695657 697197

Neighbor

gene id symbol gene type direction distance location
CI01000304_00682765_00692613 NA coding downstream 3001 682509 ~ 692656 (-)
CI01000304_00670372_00671143 NA coding downstream 24514 669276 ~ 671143 (-)
CI01000304_00348539_00351333 NA coding downstream 344324 347671 ~ 351333 (-)
CI01000304_00167148_00268194 ALDH7A1 coding downstream 427463 167148 ~ 268194 (-)
CI01000304_00140443_00163606 NA coding downstream 531974 139690 ~ 163683 (-)
CI01000304_00748608_00750261 NA coding upstream 51118 748315 ~ 751532 (-)
CI01000304_00843412_00844705 HINT1 coding upstream 146098 843295 ~ 844705 (-)
CI01000304_00852998_00861119 PPP2CA, PPP2CB, CDKL3 coding upstream 155749 852946 ~ 861367 (-)
CI01000304_00862451_00870277 NA coding upstream 164956 862153 ~ 872429 (-)
CI01000304_00877256_00878179 PURG coding upstream 178937 876134 ~ 878179 (-)
G418494 NA non-coding downstream 19770 675542 ~ 675887 (-)
G418492 NA non-coding downstream 26790 668572 ~ 668867 (-)
G418489 NA non-coding downstream 31320 664052 ~ 664337 (-)
G418479 NA non-coding downstream 46973 648408 ~ 648684 (-)
G418477 NA non-coding downstream 49047 646306 ~ 646610 (-)
G418423 NA non-coding upstream 29812 727009 ~ 727304 (-)
G418499 NA non-coding upstream 39672 736869 ~ 737072 (-)
G418556 NA non-coding upstream 131317 828514 ~ 828843 (-)
G418558 NA non-coding upstream 136749 833946 ~ 834162 (-)
G418563 NA non-coding upstream 141659 838856 ~ 839357 (-)
G419353 NA other upstream 1532187 2229384 ~ 2236106 (-)
G419354 NA other upstream 1565305 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 3566548 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 3964619 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 5780254 6480743 ~ 6483986 (-)

Expression


Co-expression Network