Gene
RNA
| Item | Value |
|---|---|
| gene id | G418576 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 909640 ~ 916578 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU480793 | False | 606 | lncRNA | 0.50 | 5 | 909640 | 916578 |
| TU480791 | False | 593 | lncRNA | 0.49 | 4 | 911662 | 916578 |
| TU480792 | True | 410 | lncRNA | 0.50 | 3 | 912682 | 916578 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_00877256_00878179 | PURG | coding | downstream | 31461 | 876134 ~ 878179 (-) |
| CI01000304_00862451_00870277 | NA | coding | downstream | 37211 | 862153 ~ 872429 (-) |
| CI01000304_00852998_00861119 | PPP2CA, PPP2CB, CDKL3 | coding | downstream | 48273 | 852946 ~ 861367 (-) |
| CI01000304_00843412_00844705 | HINT1 | coding | downstream | 64935 | 843295 ~ 844705 (-) |
| CI01000304_00748608_00750261 | NA | coding | downstream | 158108 | 748315 ~ 751532 (-) |
| CI01000304_01030191_01033191 | FUT10 | coding | upstream | 112594 | 1029172 ~ 1033191 (-) |
| CI01000304_01054942_01133130 | NA | coding | upstream | 138364 | 1054942 ~ 1133130 (-) |
| CI01000304_01186035_01200177 | SLC38A9 | coding | upstream | 269283 | 1185861 ~ 1200808 (-) |
| CI01000304_01216763_01232729 | DDX4, VAS | coding | upstream | 300138 | 1216716 ~ 1232729 (-) |
| CI01000304_01365055_01365447 | NA | coding | upstream | 448223 | 1364801 ~ 1365559 (-) |
| G418573 | NA | non-coding | downstream | 3786 | 902842 ~ 905854 (-) |
| G418567 | NA | non-coding | downstream | 19731 | 885806 ~ 889909 (-) |
| G418530 | NA | non-coding | downstream | 34334 | 872672 ~ 875306 (-) |
| G418563 | NA | non-coding | downstream | 70283 | 838856 ~ 839357 (-) |
| G418558 | NA | non-coding | downstream | 75478 | 833946 ~ 834162 (-) |
| G418584 | NA | non-coding | upstream | 9926 | 926504 ~ 926783 (-) |
| G418598 | NA | non-coding | upstream | 17557 | 934135 ~ 934364 (-) |
| G418601 | NA | non-coding | upstream | 34302 | 950880 ~ 951122 (-) |
| G418590 | NA | non-coding | upstream | 47161 | 963739 ~ 1020047 (-) |
| G418592 | NA | non-coding | upstream | 49848 | 966426 ~ 968577 (-) |
| G419353 | NA | other | upstream | 1312806 | 2229384 ~ 2236106 (-) |
| G419354 | NA | other | upstream | 1345924 | 2262502 ~ 2266241 (-) |
| CI01000304_04263955_04264962 | NA | other | upstream | 3347167 | 4263846 ~ 4265201 (-) |
| CI01000304_04661808_04672936 | PPWD1 | other | upstream | 3745238 | 4661766 ~ 4672947 (-) |
| CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | upstream | 5560873 | 6480743 ~ 6483986 (-) |
