Gene
RNA
| Item | Value |
|---|---|
| gene id | G418616 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 982262 ~ 983636 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU480849 | True | 1318 | lncRNA | 0.55 | 2 | 982262 | 983636 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_00877256_00878179 | PURG | coding | downstream | 104083 | 876134 ~ 878179 (-) |
| CI01000304_00862451_00870277 | NA | coding | downstream | 109833 | 862153 ~ 872429 (-) |
| CI01000304_00852998_00861119 | PPP2CA, PPP2CB, CDKL3 | coding | downstream | 120895 | 852946 ~ 861367 (-) |
| CI01000304_00843412_00844705 | HINT1 | coding | downstream | 137557 | 843295 ~ 844705 (-) |
| CI01000304_00748608_00750261 | NA | coding | downstream | 230730 | 748315 ~ 751532 (-) |
| CI01000304_01030191_01033191 | FUT10 | coding | upstream | 45536 | 1029172 ~ 1033191 (-) |
| CI01000304_01054942_01133130 | NA | coding | upstream | 71306 | 1054942 ~ 1133130 (-) |
| CI01000304_01186035_01200177 | SLC38A9 | coding | upstream | 202225 | 1185861 ~ 1200808 (-) |
| CI01000304_01216763_01232729 | DDX4, VAS | coding | upstream | 233080 | 1216716 ~ 1232729 (-) |
| CI01000304_01365055_01365447 | NA | coding | upstream | 381165 | 1364801 ~ 1365559 (-) |
| G418592 | NA | non-coding | downstream | 13685 | 966426 ~ 968577 (-) |
| G418601 | NA | non-coding | downstream | 31140 | 950880 ~ 951122 (-) |
| G418598 | NA | non-coding | downstream | 47898 | 934135 ~ 934364 (-) |
| G418584 | NA | non-coding | downstream | 55479 | 926504 ~ 926783 (-) |
| G418576 | NA | non-coding | downstream | 65684 | 909640 ~ 916578 (-) |
| G418628 | NA | non-coding | upstream | 17644 | 1001280 ~ 1001682 (-) |
| G418629 | NA | non-coding | upstream | 37021 | 1020657 ~ 1020941 (-) |
| G418593 | NA | non-coding | upstream | 188562 | 1172198 ~ 1172813 (-) |
| G418595 | NA | non-coding | upstream | 189545 | 1173181 ~ 1175223 (-) |
| G418647 | NA | non-coding | upstream | 192131 | 1175767 ~ 1176008 (-) |
| G419353 | NA | other | upstream | 1245748 | 2229384 ~ 2236106 (-) |
| G419354 | NA | other | upstream | 1278866 | 2262502 ~ 2266241 (-) |
| CI01000304_04263955_04264962 | NA | other | upstream | 3280109 | 4263846 ~ 4265201 (-) |
| CI01000304_04661808_04672936 | PPWD1 | other | upstream | 3678180 | 4661766 ~ 4672947 (-) |
| CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | upstream | 5493815 | 6480743 ~ 6483986 (-) |
