G418589


Basic Information

Item Value
gene id G418589
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1182875 ~ 1184560 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480822
AAATGTGAACCTGACTGTAATCAAAATTAATTATGACTTTGTCTTCACATGTGATTTTGCAATTATTATTCACTTTAGTGTATTGCCAGTGCTGATCACAGTGTTAGGCGCAGATGTTCTCCACATGTTCTTCTAACTGTTGGTGAGTTTGGGGGTCAGGTGAAGAGCTCTGTATAATCTACTGTGGCCTCTCTCTGTCCACATGCCTGTAGCAGGTACTCCTCTTCTCCAGATGAGCTCAGCGGCTCCACCTAGTGCCAGAAAATGTAGAGTTACACATGGCTTAAATGGAGATTTTGGAGGTGGAGGGGGGAGACCACCCTCTCAAACTCCAAACCGACCTGTAGCCAATCACGTCATCAATATTCAATATGGTGTGAGTACAATAATAGCAAGCAGTTCTGTAGTGATTTGTGTTAGCTGTGAATGCTGTATGGCATGTATTGTGACTTTCTTTTGTTTCTCGCGTATGGAATGCGCTCAACGGCCCCAGTCTATTTAAACCTAATGACTACCCTGCAAGTCGGTTCATTCTCCGCCTATGACTGGCATGCATGTGGACGTGACATGTTTCTTGTTAATAGGCGTGAGATGCCAAACTGTTTGGTCATTATCACCATGTTAACTATCCCATTGAGGTTAGAAGCATCTAATTTATTCCACATACATAAAGAACATAATTTATCAATTCAATATGAGAGTGAGCATTAAATTTATAATGTTCTCCATAATTTGTTCTCTAAAATAACTATAATCAATTCAATGTAACATAGCTCATTTGCCATGAAACATACACATAATTCTGGCCACATACTTGAAGATTTTAAGCCTGATGTTGGGGCCGATTTGCAGTGATCAGGTGGGGTGGGGGTGTTGCGTGTTTAAAATAGAAGAATATAGAAGCATTTTCACTAGTGGTCTCAGACTTTTGGACACCACTGCTTATATGAAAGAAAGAGAAGAAAATAAATGATCAGCCAAAACCTTTCCAGCATACAGCTCTACTGGTCAAGGGCTGATTATAAAACTTTGTTTTAAACCAAGAAGAATTGTATATCAATGGATTTATATGAACATTAGGTTGCATTTTATATTATGATTTCACTGCAGCACACAATAGACACCAATATCAGGACACCATATTGAATCTTACACAAGCTTGTGAGGGACAGACTTATAGTGTTTAAAATGTCAAGCACCGTATAAAGGTCCTACATCACTTGTAATTTTCACAACTCACAATGTAGTTTTTTTTGGACAACTGGCATGTTGTTAAAAAAAACCAGTACAATCCATTGAATGCACTATACTTCTGTCCCTCACAGACTGAAAAAATAGTTTTGGATAGTTCTGGCTCAGTTTACCCCGAGTGATGTGTGCAGTACATTACCTGATGATATTCCACTAGTTCACTGAGTGATGAGAATTTGATCTGGTCTCCCAGCAGCATGTAGCAGTTCTCTGAAGCATCGATCAGCAGGTGCTTGATTCCCTCTTTGGAGCGATAGGAAAGAACATATCCAAATATTCTTTCACTAACACGCACCAAGAAGAGCCCAGGCTCGCCATCATTCAGTAGCGCCTCTGCCTGTTCACGAGATATTATACCTGCAGGTAGTATGAGATTATGTATATTATAGGAAACCCAGCAGCATTCGGTATAAATGCAGATGGCAGCAGTTCACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU480822 True 1686 lncRNA 0.40 1 1182875 1184560

Neighbor

gene id symbol gene type direction distance location
CI01000304_01054942_01133130 NA coding downstream 49745 1054942 ~ 1133130 (-)
CI01000304_01030191_01033191 FUT10 coding downstream 149684 1029172 ~ 1033191 (-)
CI01000304_00877256_00878179 PURG coding downstream 304696 876134 ~ 878179 (-)
CI01000304_00862451_00870277 NA coding downstream 310446 862153 ~ 872429 (-)
CI01000304_00852998_00861119 PPP2CA, PPP2CB, CDKL3 coding downstream 321508 852946 ~ 861367 (-)
CI01000304_01186035_01200177 SLC38A9 coding upstream 1301 1185861 ~ 1200808 (-)
CI01000304_01216763_01232729 DDX4, VAS coding upstream 32156 1216716 ~ 1232729 (-)
CI01000304_01365055_01365447 NA coding upstream 180241 1364801 ~ 1365559 (-)
CI01000304_01403041_01410830 APH1A coding upstream 218332 1402892 ~ 1410830 (-)
CI01000304_01416856_01418996 NA coding upstream 232089 1416649 ~ 1419347 (-)
G418594 NA non-coding downstream 4181 1177781 ~ 1178694 (-)
G418647 NA non-coding downstream 6867 1175767 ~ 1176008 (-)
G418595 NA non-coding downstream 7652 1173181 ~ 1175223 (-)
G418593 NA non-coding downstream 10062 1172198 ~ 1172813 (-)
G418629 NA non-coding downstream 161934 1020657 ~ 1020941 (-)
G418652 NA non-coding upstream 27070 1211630 ~ 1211873 (-)
G419213 NA non-coding upstream 72120 1256680 ~ 1256965 (-)
G419238 NA non-coding upstream 130825 1315385 ~ 1315588 (-)
G419239 NA non-coding upstream 132716 1317276 ~ 1317517 (-)
G419246 NA non-coding upstream 139411 1323971 ~ 1328397 (-)
G419353 NA other upstream 1044824 2229384 ~ 2236106 (-)
G419354 NA other upstream 1077942 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 3079185 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 3477256 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 5292891 6480743 ~ 6483986 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G243386 NA non-coding NC_047609.1 CM018555.1 19349564 ~ 19352080 (-)