G418113


Basic Information

Item Value
gene id G418113
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1205591 ~ 1206410 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480279
TTCAAATATCTCCCATAAATCTCAATCTCTCAGGCTCAACAGACGGTTCCCAAATGGCTGGAAGAAATAGCTTTCAGTGCTCATGGGACAACAGGCATCAACCCACGTGGAAGATTGTTTGCATCTACAGACACACGGAAGGGAGGATCCTTCAGGACAGACGAGCCGCCACCAGCATCCGCCCCAAAACCAGCAGCCGCGGCAGATGATGAGGAATGGGAATAACTACACATACACCTTGTTCTATTATGTAGATTAACTTTTATTTTGAGTTTATTCATTTCTCCAATGTGTTTGTTAAAAAGTTGAATTATTGATGTAGCATTACAGTAAAGCTGTTGCATTAAAAGAAGTCACATTCTGAAAGCTGTAGGTTTGATCTCCAGGACAGAATACTAATCAAGACATGATACCTTTTAGCAGTTTGGTTTGAATTGATGATTTTTTTTTTTTTTCTTATCACTTGTTTTGACTAGAGCACAACTGGATTAGTGGATTTTGTTTTTAAGTTGTCACATTTTAACACTTTGCTAAGAGTGTATTGAGTTTTGTAAGCCTTTACCTGAAGCTCTTTCCTACAGTTGTACCTTATCAATCAGTTCTGTTGTTAAATGTGACAGTTTGCAGGTTGTTTTTCTTGACGTTTTTGTCTTAAAGCCAAAGTATACAACAAGTAAAGAAACTTGTTTTGCCATTGCACCTTACCAGAAAAAGGTAAATAAAGTGTTTACCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480279 True 734 lncRNA 0.38 2 1205591 1206410

Neighbor

gene id symbol gene type direction distance location
CI01000304_01173248_01184405 SH2D4A coding upstream 21062 1172137 ~ 1184529 (+)
CI01000304_00983004_01018406 NRG1 coding upstream 186898 982912 ~ 1018693 (+)
CI01000304_00962923_00975418 NA coding upstream 229947 962753 ~ 975644 (+)
CI01000304_00933179_00942864 NA coding upstream 261726 931798 ~ 943865 (+)
CI01000304_00884782_00917034 WRN coding upstream 288557 884490 ~ 917034 (+)
CI01000304_01269500_01313976 PPIP5K2 coding downstream 61613 1268023 ~ 1314632 (+)
CI01000304_01323957_01324596 C16H5ORF30, CUNH5ORF30 coding downstream 117547 1323957 ~ 1326322 (+)
CI01000304_01337171_01361506 CHD1 coding downstream 130761 1337171 ~ 1361506 (+)
CI01000304_01366207_01367994 DCP2 coding downstream 159710 1366120 ~ 1368002 (+)
CI01000304_01369056_01372878 DCP2 coding downstream 162186 1368596 ~ 1372972 (+)
G418261 NA non-coding upstream 25574 1179814 ~ 1180017 (+)
G418257 NA non-coding upstream 38993 1166295 ~ 1166598 (+)
G418256 NA non-coding upstream 39398 1165944 ~ 1166193 (+)
G418253 NA non-coding upstream 42460 1162022 ~ 1163131 (+)
G418248 NA non-coding upstream 52019 1153175 ~ 1153572 (+)
G418649 NA non-coding downstream 300 1206710 ~ 1206976 (+)
G418691 NA non-coding downstream 125924 1332334 ~ 1332597 (+)
G418667 NA non-coding downstream 158604 1365014 ~ 1365559 (+)
G418694 NA non-coding downstream 169551 1375961 ~ 1376294 (+)
G418701 NA non-coding downstream 175937 1382347 ~ 1382859 (+)
G418116 NA other upstream 330342 872670 ~ 875249 (+)
G418059 NA other upstream 641140 558092 ~ 564451 (+)
G417987 NA other upstream 977738 226703 ~ 227853 (+)
G418981 NA other downstream 886084 2092494 ~ 2093678 (+)
G420445 NA other downstream 3096926 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3966813 5173426 ~ 5176791 (+)
G421162 NA other downstream 5034823 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 6146239 7352621 ~ 7354396 (+)

Expression


Co-expression Network