G418669


Basic Information

Item Value
gene id G418669
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 1564905 ~ 1568257 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU480920
GGAGCTGGACTCCACCCAGTTGACGGCGTTGAAGAGTGCGGCGGTTCCTCCATAGCACGCGTTAGTGGTGTCCACTCCCTCCACGTCAGTGTTGCCCGACTCTTCGAACAGCTGCATCAGGACAGTCTTGGTGGATTTAGACTTATCGATGATGGTTTCCGTGCCCACCTCCAGCCTACCCACACTGTCGTAGGACAAGCTGTTCCTCTCCATTAATCGCTGCACCACCGTCAGGCACAGAGAGTTAATGTCCTCCCGGTCCGAGCAGAAACCCATGCGCGCCTGTCCCAGCCCAACGGTGTATTTACCGGCCCCGACGCCATCGTACTCTTCCAGCTCTGCTTGGTCCACGTACTGAGAGGGCACGTACACCTCCATGGCGATGATTCCCACATCTTTAGGCCATGTGGCCTCACAAATTGCAGGGAGTGATCCAGGCATTCTGAATGGACTGAGACTTTATAATTGAGTTCAATTCCCGGGTAGTAATAGTCGCTTGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU480920 True 501 lncRNA 0.55 2 1564905 1568257

Neighbor

gene id symbol gene type direction distance location
CI01000304_01392985_01399147 CA9 coding upstream 165752 1392985 ~ 1399153 (+)
CI01000304_01375020_01379551 NA coding upstream 185089 1374871 ~ 1379816 (+)
CI01000304_01369056_01372878 DCP2 coding upstream 191933 1368596 ~ 1372972 (+)
CI01000304_01366207_01367994 DCP2 coding upstream 196903 1366120 ~ 1368002 (+)
CI01000304_01337171_01361506 CHD1 coding upstream 203399 1337171 ~ 1361506 (+)
CI01000304_01681164_01706159 ANKRD55 coding downstream 112907 1681164 ~ 1706397 (+)
CI01000304_01718700_01722248 NA coding downstream 150071 1718328 ~ 1722276 (+)
CI01000304_01829156_01835147 ST8SIA4 coding downstream 260899 1829156 ~ 1835165 (+)
CI01000304_01877287_01890608 SYK coding downstream 307133 1875390 ~ 1890746 (+)
CI01000304_02136252_02167869 SEC31A coding downstream 567995 2136252 ~ 2168463 (+)
G418671 NA non-coding upstream 4250 1521407 ~ 1560655 (+)
G418683 NA non-coding upstream 75885 1488555 ~ 1489020 (+)
G418675 NA non-coding upstream 78397 1478549 ~ 1486508 (+)
G418666 NA non-coding upstream 117070 1438778 ~ 1447835 (+)
G418702 NA non-coding upstream 181563 1383014 ~ 1383342 (+)
G418751 NA non-coding downstream 979 1569236 ~ 1569435 (+)
G418799 NA non-coding downstream 110534 1678791 ~ 1740632 (+)
G418798 NA non-coding downstream 148270 1716527 ~ 1717649 (+)
G418790 NA non-coding downstream 202310 1770567 ~ 1809992 (+)
G418860 NA non-coding downstream 289910 1858167 ~ 1858452 (+)
G418116 NA other upstream 689656 872670 ~ 875249 (+)
G418059 NA other upstream 1000454 558092 ~ 564451 (+)
G417987 NA other upstream 1337052 226703 ~ 227853 (+)
G418981 NA other downstream 524237 2092494 ~ 2093678 (+)
G420445 NA other downstream 2735079 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3604966 5173426 ~ 5176791 (+)
G421162 NA other downstream 4672976 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5784392 7352621 ~ 7354396 (+)

Expression


Co-expression Network