Gene
RNA
| Item | Value |
|---|---|
| gene id | G418865 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 1899156 ~ 1900776 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU481145 | True | 1621 | lncRNA | 0.35 | 1 | 1899156 | 1900776 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_01877287_01890608 | SYK | coding | upstream | 8410 | 1875390 ~ 1890746 (+) |
| CI01000304_01829156_01835147 | ST8SIA4 | coding | upstream | 63991 | 1829156 ~ 1835165 (+) |
| CI01000304_01718700_01722248 | NA | coding | upstream | 176880 | 1718328 ~ 1722276 (+) |
| CI01000304_01681164_01706159 | ANKRD55 | coding | upstream | 192759 | 1681164 ~ 1706397 (+) |
| CI01000304_01392985_01399147 | CA9 | coding | upstream | 500003 | 1392985 ~ 1399153 (+) |
| CI01000304_02136252_02167869 | SEC31A | coding | downstream | 235476 | 2136252 ~ 2168463 (+) |
| CI01000304_02206338_02219356 | NA | coding | downstream | 305562 | 2206338 ~ 2219642 (+) |
| CI01000304_02229520_02235812 | HNRNPDL | coding | downstream | 328363 | 2229139 ~ 2236204 (+) |
| CI01000304_02236583_02240921 | HNRNPD | coding | downstream | 335591 | 2236367 ~ 2241608 (+) |
| CI01000304_02254859_02262580 | MAT2AL, METK1 | coding | downstream | 353118 | 2253894 ~ 2264078 (+) |
| G418861 | NA | non-coding | upstream | 39050 | 1859877 ~ 1860106 (+) |
| G418860 | NA | non-coding | upstream | 40704 | 1858167 ~ 1858452 (+) |
| G418790 | NA | non-coding | upstream | 89164 | 1770567 ~ 1809992 (+) |
| G418799 | NA | non-coding | upstream | 158524 | 1678791 ~ 1740632 (+) |
| G418798 | NA | non-coding | upstream | 181507 | 1716527 ~ 1717649 (+) |
| G418872 | NA | non-coding | downstream | 8343 | 1909119 ~ 1909325 (+) |
| G418883 | NA | non-coding | downstream | 23138 | 1923914 ~ 1924175 (+) |
| G418884 | NA | non-coding | downstream | 23643 | 1924419 ~ 1925229 (+) |
| G418885 | NA | non-coding | downstream | 25140 | 1925916 ~ 1926137 (+) |
| G418886 | NA | non-coding | downstream | 25446 | 1926222 ~ 1926560 (+) |
| G418116 | NA | other | upstream | 1023907 | 872670 ~ 875249 (+) |
| G418059 | NA | other | upstream | 1334705 | 558092 ~ 564451 (+) |
| G417987 | NA | other | upstream | 1671303 | 226703 ~ 227853 (+) |
| G418981 | NA | other | downstream | 191718 | 2092494 ~ 2093678 (+) |
| G420445 | NA | other | downstream | 2402560 | 4303336 ~ 4303832 (+) |
| CI01000304_05173869_05175309 | NRARP, NRARP.L, NRARPA, NRARPB | other | downstream | 3272447 | 5173426 ~ 5176791 (+) |
| G421162 | NA | other | downstream | 4340457 | 6241233 ~ 6242997 (+) |
| CI01000304_07352697_07354032 | NA | other | downstream | 5451873 | 7352621 ~ 7354396 (+) |
