G418909


Basic Information

Item Value
gene id G418909
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2059352 ~ 2066863 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU481191
TAATAAAGGTTACAGCAGTACTGCAGAACCGGAATGATCAAGGTGTACAACATGAATATATATATATATATATATATTTTTTTTTTTTTTTACATACTAATTGACGAGGCCATTCCCATGGTTAAATTGGCTGTTTCCAAAAGCATTAAAGGATCAGCTGTCTTGCCGCGTTTTTTTTTTTTTTTTTTTTTTTCTACTTTGTATAATGAAACGTATTTTATTCCTGAATTTTGCTTGAAAACAAAGCCACATTTTGACAATTACAACTGAATCAAAACTATTATTTGATCATATTTGATATCTGTGTGTGAGCTTTTGCTCTATAACACTCATACTGCACTGTTACCGAAAAAGTCCACAATTAAAAAGCTGAGTCCAAATAAGAATAACTGCATTATTGAGAATGTACAATTCCTCACAGCTAGAGAACGAACATAATTCATACGCAGTGCATGAACATTTTGAAATGTGGTAAAGAAGCAACTCTTTGGTCAAAGGTAACATGTAAATACTAGTGTATAAAAAAAGTTACTTTATATTTTATGGTATATTTACTATTGATTAGTTAAGATCTCCCATCATCATTCAAGGCATTGAACAGATCATGAACAGGTTTGATGGTGCACAACAACTGCAAACAGCATGAAGAATCAGCTCTGCATTTATTTCAATGTGAAATGGAGACTAAAATAATCCACATTATCTGTACACCAAGTACGGAAAAACATAAATATAACAGAAACAGGTTCAATCAGTGTGTTTTTGAGGTCTTCAGGGTCAAAGGTCATGGAACCATCAGGAAGGATGACTCTCACTTTCATGTCTCTGCTGATCTCAGGTCAATGACATTTAAAGCTTCATAGTGTGATGGACGTGTTGATGTGTTAACGTCATTTCAGGAGGTTTACAGCTGCTTCTCGAATGCATTGCGCTGCTTTCTCGATTTCCTCCTGCGTCTGCTCGATGGTGACAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU481191 True 974 lncRNA 0.35 2 2059352 2066863

Neighbor

gene id symbol gene type direction distance location
CI01000304_01877287_01890608 SYK coding upstream 168606 1875390 ~ 1890746 (+)
CI01000304_01829156_01835147 ST8SIA4 coding upstream 224187 1829156 ~ 1835165 (+)
CI01000304_01718700_01722248 NA coding upstream 337076 1718328 ~ 1722276 (+)
CI01000304_01681164_01706159 ANKRD55 coding upstream 352955 1681164 ~ 1706397 (+)
CI01000304_01392985_01399147 CA9 coding upstream 660199 1392985 ~ 1399153 (+)
CI01000304_02136252_02167869 SEC31A coding downstream 69389 2136252 ~ 2168463 (+)
CI01000304_02206338_02219356 NA coding downstream 139475 2206338 ~ 2219642 (+)
CI01000304_02229520_02235812 HNRNPDL coding downstream 162276 2229139 ~ 2236204 (+)
CI01000304_02236583_02240921 HNRNPD coding downstream 169504 2236367 ~ 2241608 (+)
CI01000304_02254859_02262580 MAT2AL, METK1 coding downstream 187031 2253894 ~ 2264078 (+)
G418886 NA non-coding upstream 132792 1926222 ~ 1926560 (+)
G418885 NA non-coding upstream 133215 1925916 ~ 1926137 (+)
G418884 NA non-coding upstream 134123 1924419 ~ 1925229 (+)
G418883 NA non-coding upstream 135177 1923914 ~ 1924175 (+)
G418872 NA non-coding upstream 150027 1909119 ~ 1909325 (+)
G418980 NA non-coding downstream 19447 2086310 ~ 2086528 (+)
G418998 NA non-coding downstream 113698 2180561 ~ 2184793 (+)
G419001 NA non-coding downstream 119868 2186731 ~ 2187419 (+)
G419006 NA non-coding downstream 161778 2228641 ~ 2228848 (+)
G418116 NA other upstream 1184103 872670 ~ 875249 (+)
G418059 NA other upstream 1494901 558092 ~ 564451 (+)
G417987 NA other upstream 1831499 226703 ~ 227853 (+)
G418981 NA other downstream 25631 2092494 ~ 2093678 (+)
G420445 NA other downstream 2236473 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 3106360 5173426 ~ 5176791 (+)
G421162 NA other downstream 4174370 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 5285786 7352621 ~ 7354396 (+)

Expression


Co-expression Network