G419370


Basic Information

Item Value
gene id G419370
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2095578 ~ 2097618 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU481732
GTCTAATCAGATTCAATGAACTATGCTAAGCTATGCTAAAAGTGGTACCGCCAGACCCGGAGATCGGCTGAATGGATTCGAAAACGGTAAAAATCAACTGTTTAACTCTAGGGGAGTTAGAAAATGAGCCTATTTTCAAAAAAAGTGGAGTGTTCCTTTAAGTTCACATCCCCTTGTTTTTGAACTGGAATTTAAGGGTGTGTTTACACTGGTAGGTTTGGTTTGATTAAAACAAACTCTTGTGCGATTGCTCTGTTAATGCGGTTCATTTGAATAAGTGTGAACGCTGCCATCCGAACCCTGGTGCACACCAAACAAGTGGACAGAGACCCCTGAAAAGGTGGGACTTGAACCAAATGAACTCTGGTGCAGTTCGACTGAAATATGAATGCAACATGGACCAAAGACATGTAACTGAACCAAAAACAGTTTGTGATGTCACAAGATGCGACCCTTAAAGGGGTATTCCTGTTTTTTCTCGTCATAGTCGCGATGTTGCCCATTACAGTTCAGTACAGGCATCAGAAACGCATCTCCTTGCAGTAAGTTTTCGTTTGTGTGTAACAAAGGAATTCCTGCTGCTGTTTTGACTCCTTTACACGTTTTATAAGCTCTTCACGAGTTCTCAGCTGGTAAAAATACCATCATATGTACAAGCACATACAACGACCGCATTTAGCCCAGCACACAGCATTGTTTTAGATGTTCGGTAAGTTCCATTTACATTGAAAAATAATGGAAAAGTAGTGCAGTGGAATGAAGAAACGTGTTCTGTGTGAATGGCCCCTTAGAATGTTACAGCTAGATGCTTAGCAACAGACAGCCAATCACATGCCTCATATTCACATGCTTTGGAGAGTCATGGAAAAAACATTGTATAAACAGTAGTTACAGCATTTAAGTGGAAAATATCAAATGGTGACAGAAAACGCTTCAGTTGAAGAAGAGTGAAGAAGAGGCCATTTCATTCTTACTTTTATAGTACGAAATGTCCATTGGGATAAACTTTAGATGGTAATGTATAATATGAGGATGTTCAATACTAGAGCCTTTATGTAAACAAGTCGCATGCAACGTTTATCCAAACAGTGACACTGACACTGCAAATATGCAAATAAAGACGTTAACCCAGGGTTTAGGAATGTACAGTGTGAAACAGCAATTTATGAATACCCAGGATTAATTAATTAGATTAACCCTGGGTAAATTATGAGCAGTGTGAAATGTGAAGCAAGATAACCCAGGATTCCCTTTACTCTGGGTTTAGTATCACCCAAGGTTGACTATTTCAAGTGTGAAAAGCAAAACTAGCACCCCCTGATGGTAGGAAAGAAAATCAGCCCTATCATTAAAACCATGTGCAGGGCATGGCACTGTTACAGTTGTTGCTTGTCTTGAAAAAGGCAGTTGCTAACAAGTGTCTAAGGGGTCGTTTACATGACACCATTTGACACCACTAAAATTGCACAAGTTTTTGAAAACTATACCATTATCGTCTTTGTGTAAACTACAAAAATGCAAATTTGTGAAAACTGTGATGTCGTGCATGTGTATTATGTGTTCAGTCTATAGGCGGGTAATGTTTCTTTACAAACTGACTTTGCCAACTACTGGTCTGGAATGAATAATACAGCATTTTTAGTTATTTTCTGCTGATCAGTACATCGTTGTCATGTAAACATGCGCTAAAGGGGACTACAGAGGTTGTTGGGGACATTAAACATCATCAGCTGAACAGGTTAAACTCTCAATGTTTTTAATAAAGACTGAAAGAGTTGTTGGAAGCTTAATGGTGGTGACGTTGAAGTCATGTGACCGTAGTGTAGTTTGTTTAGCTTTAGCTTTTTAATTCTGTGATTGCATTTAAGAATTATACGCTTTTATTGGTCACAGAGCTTATTTTATGCAATATTCCAAAAGCCAATGGAAAAATCCTATTGGGTTTTTGTTGAGGGAACTAGAGTGATGCTAACTTACAGGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU481732 True 1982 lncRNA 0.39 2 2095578 2097618

Neighbor

gene id symbol gene type direction distance location
CI01000304_02066780_02080386 SPTLC1 coding downstream 15192 2066551 ~ 2080386 (-)
CI01000304_02061451_02063273 NA coding downstream 32117 2061260 ~ 2063461 (-)
CI01000304_02041045_02041482 NA coding downstream 54081 2040930 ~ 2041497 (-)
CI01000304_01977963_01994161 ROR2 coding downstream 101417 1977858 ~ 1994161 (-)
CI01000304_01975851_01976768 NA coding downstream 118211 1975666 ~ 1977367 (-)
CI01000304_02131491_02133762 NA coding upstream 33682 2131300 ~ 2135561 (-)
CI01000304_02184710_02202104 NA coding upstream 86785 2184403 ~ 2202409 (-)
CI01000304_02220391_02227729 ENOPH, ENOPH1 coding upstream 122267 2219885 ~ 2228318 (-)
CI01000304_02244094_02244588 NA coding upstream 146101 2240069 ~ 2244588 (-)
CI01000304_02299398_02304171 NA coding upstream 201525 2299143 ~ 2305162 (-)
G419402 NA non-coding downstream 27822 2067243 ~ 2067756 (-)
CI01000304_01937620_01968424 AUH non-coding downstream 137412 1937620 ~ 1968936 (-)
G419387 NA non-coding downstream 192134 1902641 ~ 1903444 (-)
CI01000304_01897341_01897684 NA non-coding downstream 199168 1894422 ~ 1898210 (-)
G419324 NA non-coding downstream 335281 1759956 ~ 1760297 (-)
G419363 NA non-coding upstream 4839 2102457 ~ 2161900 (-)
G419353 NA non-coding upstream 134137 2229384 ~ 2236106 (-)
G419356 NA non-coding upstream 138687 2236305 ~ 2239684 (-)
G419418 NA non-coding upstream 320865 2418483 ~ 2418785 (-)
G419354 NA other upstream 164884 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 2166127 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 2564198 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 4379833 6480743 ~ 6483986 (-)

Expression


Co-expression Network