G419363



Basic Information


Item Value
gene id G419363
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 2102457 ~ 2161900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU481722
CATCTCCAATTGGTGCTCCAGGCGCACCTTCCATGTTAACCTGAGGCATGTTGGGATTTCTGCTTGGGGGTCCCAGTGGCTGCTGTTGGATGGGGGTGAAGGTTGTTGGGCCCACATGCTGATCTGGAACCTGTTGTTGTTGCGGTTGAAGGGTCTGCATACTTTGGGCAGCAGGGACCTGAGGTTCCCCTAGAGGGGCCATAATGGGTGCTGTAATGGGTGCAGGTGGAGTGAAGTTATCTGGAATCTGGAGACCAAAAACAGGGAATGTTTTCTTGAAATAAAGGCAAATCCATGTACATTATGAGCAAGACAATCTTCAGTCAAACCCACCTTCTTCTTTTTAGGTGCTCTGTTGAGTGTGGGGGGATCGTTCCAGCCATTCTGAGGTCCTGCAGCGGAACAAAAGAGATCTTCTCATTTTAGATTTCAGGTGGTGGCACTGCACTGTCCAACCTGCTGTACCTCTGAGAGGCTAATGCCAGGTGGACATCTGTTTAAAGGGATAGGTTCACCCAAAAATGAAAACTCTGTCATCATTTACTTACCCTCAAATTGCTCCAAACCACAGAAACCAGGAAGAAATCGTTTTGATTTCACCTGCTCGTCCCAGTTCCTGTTTCCCTGCCGAGTTGAGAGTTACCCGTTTCTACATTTCTCTTTGTTTTTTATATTATCCGTTAAGTCCACTTAAAATGTTAGTCAAGGTTTTTTTTTCTGGCATAAAACATTCATAATATTGTTCTTTCGTGACCATTTTCAGTCCCACTTTATATTAGGTTTCTTTAACTAGTGTGCACTTACATGATAAAATTAAGCTTTTGATACCACATGTTGTTCTGCCAGATTGGCATTTGCAGCTATTGAGGTTGTGATACGGGTAGGGTAGGCCGGAGGATTTCGGTTGGGGTACATCAGCTGTGTAATTACATGCAGTTATTTAAAGGAAAGTACAGTGTAAAAACATGTATGTAAACAAGATAAAGTATATTGATCAAATGTTCTGTGTAAATACTCAAAGAAAGTGGGTCGCTATTTTCCTTTCTCTCTGGCCAAAATTCATTTTAAATATGCTAAAAATACATTACCGGTCAAAAGTTTGGAATAATTATGATTTTTTTATGTTTTTGAAAGAAGCCCCTTCTGCTCACCAAAGCTGCATTTATTTGATCAAAAATACATTAAAAATAATATACTTTATATAATATAATATAATATAAGTAATACTATGAAATATTATTACAATTTAAAATAACTGTTTTCTATGTGAATCTAATAAATGTAATTTATTCCTGTGTTCAAAGCTGAATTTTCATCATCATTACTCCAGTCTTCAGTGTCACTCTCAAGGATCAAAACTTTTAAACTGTAATAATATTTCACAATATTACTATTTCTACTGTATTTTTGATCAAATAAATGCAAAATATATTTTTCAAATTAACAATATATTGAGTTTAAATCTTTAGAAAATATATTTCCAATCTTAAAATACATTTTCAGTAAATGCAAAACATATTTTAAAATATATTTTGGACAATATATATATATATATTGAGATATTAGAAAATATTTTTACACACACAAAGCATTATGAGTAGGGCTGCACGATATATGAAAATTATCAAAATATCGCACATGTATGTATCGCAATATGCACGTTGCATTGGCTTGCGATAACTGCATGATTTTAATACTCCAAAAGATAACAAAACTTCCACATTTTAGGTCGCTGCAGAGAGTAGACTGGACACATGACTGTTACATGCATGTGACATACTTAATTTTATTAAATGCAATAAGCGAAGTATTCACGCACACAACAAGCCGCCTCTCGGATAGTGTGTGATCCCGAATTCGGATCTCTTCAGCTTACAGCAGATACACACAAAATTATGTCAAAATGCCCATCCTGGCGAGTATTCATGTAAACACAGTCAGTTATAATCTTAATTGGAGTAAATATAACTATATATTGGATCCGTGCAGCTCTTAAAGTGACAGCAGCCTAATAAACCTGCTGCTGTCTGTGTGCTTAATGTTAATCAAACAACAAAAGACAAAGAGAAAATCCCTCATTGCTCTTGACTGAACAACTTTTGTAGCTTTAATAAGAATCAGTGTATATTTAATTCATACAGTGAAGACTAAGCAGTGTTTTATTTTTACATTTGAATATTCAATTTCTGTTGAATAACTTGCCATTTTTTGTTAAATAAACCCATTGTAGGCCTACCTGAAACCCTAAACCCCCTGGTTTACACTGACGTTAAAATGACACCTACTTTTTATGTAAACACTGCTGTTCACTTTCAGAAGTTAGGGATGCTTTCTTCTCTCAAAAAGAATGTGAAACATGTAAGTTGGTTATATCATTTTCAGTTTTTACATTTATTTAAATATAATTAAAATTTATTTTACACACTTTATCGTATTGCATATCGAATATTGCATTAAGGAGTTATCATGCAGCTATAATTGTGTGTGTGTTTGATGAGTCTCTTACCCTTGTCTTGAGTCTCAGCTCTATGTGGATGTGAATGTTTTTGCCCCAACCATTTTTAATCAACACACTTCCATTGAGACGTCAGCTGTCACAACATAGTAATGTCAGAATTTGTCTCTGCTCAGTTAATAAAGCAGACAAGATTTATAACAACAGAAATACTTTAGCCCCAACAGGCGTACCATGACATCACATAACCATAGAAGGATTTACGCTCAGAGCCCCTCTTTGATGAAATAGCTGGTGTTAAAGAATGTGTGGATGTTGTTATTCAAAGGTGTTTATATTGTTGCATGTCAATGAATAAAGGCTGACCAGCATGAAATGTAGTAAGGAGGGTAGTTTCAGTAAATGAAGGTCAATAAGAATCTACTGAAGGAAATGTAACCGTCTAAGCAGTATTTTTTGTTTGGTGACATTTTCTCTAAACTCATAAACAGTCAATATGTTGAATTGAGTTTGGTTTGACTGAAGTTCGGTATTGGGACAAGCTGAGAGATTTGCCACCTTTGGCCTTTTAAGCACGCAAGGAATTTCTGAGACTTGTTATTACAGGCACTTGTGAAGTTCGACTGACCGGTGACTGAAATTCGTGCCCATATTTTCTACTGCATTTTAATACTGATGTATTACTGTAAGTTTCCCTAATAGCTACATCCTGCAGTTTCCCTGCATACGTCACCAGAGAGAAGTCTGATGTTTTCATTGGAAGATAGTTATGAAATTTTTGTTAAACATTACAAGGGCAAAACATTTTAAAAAATGGATCAAATGCACAGATTAATTCTTCACAATAAAATCCATAAACATGCAATTAGAAAATAAATAGGATATATTTTCATTTCATGCCAACTTTAAAAAAATTAGCTGAATCTTGTATAACTTAAAAAATTAAGTTGAAATTGGTTAAATTATAATGTTATTTTGAGTTAAAGTAATGGAAAAACATATGTTGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU481722 True 3462 lncRNA 0.35 2 2102457 2161900

Neighbor


gene id symbol gene type direction distance location
CI01000304_02066780_02080386 SPTLC1 coding downstream 22071 2066551 ~ 2080386 (-)
CI01000304_02061451_02063273 NA coding downstream 38996 2061260 ~ 2063461 (-)
CI01000304_02041045_02041482 NA coding downstream 60960 2040930 ~ 2041497 (-)
CI01000304_01977963_01994161 ROR2 coding downstream 108296 1977858 ~ 1994161 (-)
CI01000304_01975851_01976768 NA coding downstream 125090 1975666 ~ 1977367 (-)
CI01000304_02184710_02202104 NA coding upstream 22503 2184403 ~ 2202409 (-)
CI01000304_02220391_02227729 ENOPH, ENOPH1 coding upstream 57985 2219885 ~ 2228318 (-)
CI01000304_02244094_02244588 NA coding upstream 81819 2240069 ~ 2244588 (-)
CI01000304_02299398_02304171 NA coding upstream 137243 2299143 ~ 2305162 (-)
CI01000304_02314977_02384157 NA coding upstream 153077 2314977 ~ 2384157 (-)
G419370 NA non-coding downstream 4839 2095578 ~ 2097618 (-)
G419402 NA non-coding downstream 34701 2067243 ~ 2067756 (-)
CI01000304_01937620_01968424 AUH non-coding downstream 144291 1937620 ~ 1968936 (-)
G419387 NA non-coding downstream 199013 1902641 ~ 1903444 (-)
CI01000304_01897341_01897684 NA non-coding downstream 206047 1894422 ~ 1898210 (-)
G419353 NA non-coding upstream 69855 2229384 ~ 2236106 (-)
G419356 NA non-coding upstream 74405 2236305 ~ 2239684 (-)
G419418 NA non-coding upstream 256583 2418483 ~ 2418785 (-)
G419422 NA non-coding upstream 259243 2421143 ~ 2421440 (-)
G419354 NA other upstream 100602 2262502 ~ 2266241 (-)
CI01000304_04263955_04264962 NA other upstream 2101845 4263846 ~ 4265201 (-)
CI01000304_04661808_04672936 PPWD1 other upstream 2499916 4661766 ~ 4672947 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 4315551 6480743 ~ 6483986 (-)

Expression



Co-expression Network