Item | Value |
---|---|
gene id | G419430 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000304 |
NCBI id | null |
chromosome length | 18613800 |
location | 2440513 ~ 2440798 (-) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU481792 | True | 286 | lncRNA | 0.30 | 1 | 2440513 | 2440798 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000304_02314977_02384157 | NA | coding | downstream | 56356 | 2314977 ~ 2384157 (-) |
CI01000304_02299398_02304171 | NA | coding | downstream | 135351 | 2299143 ~ 2305162 (-) |
CI01000304_02244094_02244588 | NA | coding | downstream | 195925 | 2240069 ~ 2244588 (-) |
CI01000304_02220391_02227729 | ENOPH, ENOPH1 | coding | downstream | 212195 | 2219885 ~ 2228318 (-) |
CI01000304_02184710_02202104 | NA | coding | downstream | 238104 | 2184403 ~ 2202409 (-) |
CI01000304_02595522_02611332 | GRIN3A | coding | upstream | 154724 | 2595522 ~ 2611332 (-) |
CI01000304_02694838_02711363 | NA | coding | upstream | 253862 | 2694660 ~ 2711502 (-) |
CI01000304_02900497_02900924 | NA | coding | upstream | 459001 | 2899799 ~ 2902102 (-) |
CI01000304_03158811_03160301 | NA | coding | upstream | 717695 | 3158493 ~ 3160301 (-) |
CI01000304_03214897_03241215 | MUSK | coding | upstream | 772685 | 3213483 ~ 3241215 (-) |
G419428 | NA | non-coding | downstream | 1788 | 2438522 ~ 2438725 (-) |
G419427 | NA | non-coding | downstream | 6931 | 2433349 ~ 2433582 (-) |
G419422 | NA | non-coding | downstream | 19073 | 2421143 ~ 2421440 (-) |
G419418 | NA | non-coding | downstream | 21728 | 2418483 ~ 2418785 (-) |
G419440 | NA | non-coding | upstream | 37464 | 2478262 ~ 2478499 (-) |
G419479 | NA | non-coding | upstream | 107743 | 2548541 ~ 2549110 (-) |
G419497 | NA | non-coding | upstream | 144607 | 2585405 ~ 2585713 (-) |
G419498 | NA | non-coding | upstream | 147495 | 2588293 ~ 2589183 (-) |
G419499 | NA | non-coding | upstream | 149169 | 2589967 ~ 2590299 (-) |
G419354 | NA | other | downstream | 174272 | 2262502 ~ 2266241 (-) |
G419353 | NA | other | downstream | 204407 | 2229384 ~ 2236106 (-) |
CI01000304_04263955_04264962 | NA | other | upstream | 1822947 | 4263846 ~ 4265201 (-) |
CI01000304_04661808_04672936 | PPWD1 | other | upstream | 2221018 | 4661766 ~ 4672947 (-) |
CI01000304_06480836_06483554 | SUB1L2, SUB1A, SUB1 | other | upstream | 4036653 | 6480743 ~ 6483986 (-) |
G422354 | NA | other | upstream | 4190288 | 6631086 ~ 6631499 (-) |
G422378 | NA | other | upstream | 4303881 | 6744679 ~ 6783046 (-) |