G419875


Basic Information

Item Value
gene id G419875
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 3287401 ~ 3379400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU482278
CAGGGGAATAATAAAACAGCTTATGTTGTACAGAAAAATATACTATATACATTTACTGTGGACGCCTTTGTGTTCACCTTTCCCAGGCAACAGTAGTCCAATGTTACGCATCTCCCCAGTACATCTGGATTTGACACCATGCATGCAACATTATAAAAAAAAAGGCAAAGAGCAAATGGGAAATATACACATTTTTCTCCAAGAACTTGTCCTGCTTGAATTATATAGTCTCTCCATCCTGCCAGTAACAGATGATTGCTGATCGATTAGCTTGTTTCCTTTGGTTCGGTTTTCTGGAATCGTGCATCAGTTTCCTTCAGCGCGGGGTTGAATTTCTCTGATGCAAGACTTAGGTCAGTGTGGAGAGACTATAACTGCACATCAAGCCATTAATACACTGTTAAAGAGTCAGTTCACAGATGGAGTTATATGATAGAGGTCTAAAAATAAACAGCAATCAGATATTTTCGGCATGTTACAGTGTTCAGATGCTTTATTGAAGTGGTTCTCAACTGGTCACAACCCAAACAATGCTGAATGCATAAAGTGAGCTGCAACAAAACCATATAATTGTGCATATCGATTGGAATTAATTGGTATTTTAGTGAAAATTTGTCACTTGATAGATACTAGCAAAATTAGACAGATATGACCCAAACTGCATAAAATATGGGTTTATTTGCAATTAGGATAAACATAATTTGAGGGGCTCATTTTTATGGCTCCCAAGAGCACAGAAATGTTAATATTTTCTGTGCTGTTGGGCCTGTGCAATTTATAGTTATATTAATACATTTCAATGTTTGATTTTATTCATTTTTGTTTACTTTGTATGATAAACAATTTTGTACTGCATTGGGTGCCACATGAAGTCAAATGTAAAATCTGGGTCCTGGGGCAAATCCAGCTGAGAACCACCGATTTACTGAATGCTGATAATCATCATATAAATCAAATCAAAAATTTAGTCTAGAATAACATACCAACCAAATCTATACTCTTAACATGCGGGACAACAAGCAGGGAAGGAAGGAATATATGACCGACTAAATATTAAACCAAGAGTCTCAGTCTCAAATATGAATGACTGGCATTAGTTCAGAACTAAACACTATTTTTTTCTTAACATATCTGCATTTTTTTTTTTTTCAAAATTGCATTGGAAAGTGTTTTACAATGCATAGGTAATTCGGAGAATCAAAATCTATTTTAAAGGGTAATATCATTAGAGCACCGAACCCATAAGCCACTTTCAGTATAAATACTGCTGCTCTAAAAATACACAAACCATCTTGCTGGTGGAACAGAAACAGGCCAAAAAAAGGAACATAAAAAGGCAGAGTTTACAAGCAAATGGTGCAAAAATGCATGAAGAAATGCACAAAAAAAAAAAAAAAAAAATTCTGGCAAACAGTCATTTTTATGCCGGGTTCAGACTAGATATTTTTGTCTGTTGTGATATTCACTGTGTCAGATTATGCAATTTTGATTGTTGTGTCATGGACAAGAGACAAGTCAGACTACACATTGCTTCCCAACCAATCATCGCTTGCTGTCTTTAACATTGTGTGTGATGTCATAGAGAAGGCGGAACTAGCGACTGACTTCCGTAAACAAGAGTGTAAACAAACTACCGAAGCGGCGTGTTAGCTTAATACTAATTCCAGCACACACGGTTTCTGAAGCACCTCCGTTATCATTCGCCAAGTCTGAGCCTCAGACGCCACGCCCTCGGACCATTGGCTGTACGCTGCACACTTAACTGGAAACACTTCAGGATTTTTGAAGTCGTCATCTGATTGGTTGAATTCTACAGGATGTCCAGAAGACGTGTGTCGTCATCTTTAGTGGTCCACCTGGAAACAAAGATGCCATGACGCCAAACCCCACCATGGAAGAAGAACGCCGTCGTGTTTACAACTGTGACAATAAGCGCTTACCAGGATCATCTAAATGCTGGATTTTCAAAAGTATGTTAAGTACGTAAAGTTCACGATATAGACTCTTTAAAATATGTCAGAGAGTTTTACACACCGGTCTGTTTGGTCATCACTGTAGGGACATCAATGTCATTTTCATGTACATAAACATGATGCGGATGCTGTGATTGATTTTTTTACATGTCGGTCAGATGTCGTCTTGGATGGTCCTTAGCCAATAAAAAATCTGCTATGGAGTCCAGCTTTCATTGGCCAAAGACCGCCCAAGAGGACATTTGACTGACATGTCACGCAACCAATCTCAGTTCGTTTTGTTCCACATCAAGTTTGGGGCGTGAAAATGTCGATGTCCCTACAATAACAGACTGGCTTACATCTAATAAATTATTAACTCAAGAACATTGTGCAAATTTACTGCAACAATGGAGCCGTGAAATTCACATACTTTTGAAAATCCACGACGGCATTCTTCTTCCACAAGGGGGTTTGGCATCACGGCATTTGTTTCCAGGTGGACCATTACGGAACGTGACACACACGTCTCCCGGACATCCTGTAGAATTCAACCAACCAGATGACAACTTCGAAAATCTTGAAGTGTTTCCAGTTAAGTGTGCCATATGCATCAAACGTTCAGCCAACGGTTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU482278 True 2587 lncRNA 0.39 2 3287401 3379400

Neighbor

gene id symbol gene type direction distance location
CI01000304_03278369_03283013 TMEM267 coding upstream 4218 3276308 ~ 3283183 (+)
CI01000304_03261474_03267659 RASSF6 coding upstream 19327 3261474 ~ 3268074 (+)
CI01000304_03193646_03207372 LPAR1 coding upstream 79019 3193388 ~ 3208382 (+)
CI01000304_03127839_03154603 NA coding upstream 132604 3126593 ~ 3154797 (+)
CI01000304_02993734_03052509 EPHA5 coding upstream 234892 2993734 ~ 3054991 (+)
CI01000304_03615644_03617791 NA coding downstream 235533 3614933 ~ 3618408 (+)
CI01000304_03666156_03669795 NA coding downstream 286756 3666156 ~ 3670934 (+)
CI01000304_03975032_03978067 SIGMAR1, SIGMAR1.L coding downstream 595632 3975032 ~ 3978545 (+)
CI01000304_03984177_03996203 KATNAL2 coding downstream 604777 3984177 ~ 3996401 (+)
CI01000304_04170630_04190266 NA coding downstream 791230 4170630 ~ 4190266 (+)
G419808 NA non-coding upstream 191463 3095705 ~ 3095938 (+)
G419806 NA non-coding upstream 203056 3084123 ~ 3084345 (+)
G419802 NA non-coding upstream 209592 3077603 ~ 3077809 (+)
G419724 NA non-coding upstream 345451 2941696 ~ 2941950 (+)
G419937 NA non-coding downstream 2123 3381523 ~ 3381763 (+)
G419940 NA non-coding downstream 9777 3389177 ~ 3389441 (+)
G420104 NA non-coding downstream 313300 3692700 ~ 3695368 (+)
G420295 NA non-coding downstream 364441 3743841 ~ 3744102 (+)
G420301 NA non-coding downstream 380097 3759497 ~ 3759761 (+)
G418981 NA other upstream 1193723 2092494 ~ 2093678 (+)
G418116 NA other upstream 2412152 872670 ~ 875249 (+)
G418059 NA other upstream 2722950 558092 ~ 564451 (+)
G417987 NA other upstream 3059548 226703 ~ 227853 (+)
G420445 NA other downstream 923936 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 1793823 5173426 ~ 5176791 (+)
G421162 NA other downstream 2861833 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 3973249 7352621 ~ 7354396 (+)
G421435 NA other downstream 4104741 7484141 ~ 7484688 (+)

Expression


Co-expression Network