G420436


Basic Information

Item Value
gene id G420436
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4233809 ~ 4275246 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU482875
TAGGCTTTATGTCAAACATCACATGAACAAACGTAAAAAACAGTGACAGGCCACACGACACAAACTGCATAAGAGAGAGAACCGTTCAGGATCAATCGTTTCACCGAAATGATTCGCTCATGCCTACCCTAAATGAGGGAAGTGAAGCGAGAGAGGACCATTCAGGTAAGTGCGTTTGATTATTCACTCAGCAACAGTGCAGCACTATAGCCTGCAGTCATGAAATGAAGTTTGTCACTGGAAAAGCAACATTATTATGAAAATAACTGAATTACTGGCATGGTATTGAAACATTAATAGGCCTAAGTTGGTAGCATCGCTACTTTTAGTTGGTCACCCCGAACGCCGCCCCTAATTACCAAGTACCATCTGATAGCATGTACAGTACTTTCTTGTAAGTGTTCTTAACATTTGTTCTGCTGCAAATACATGTATATTTTCCTTTTCTATTACTTGTCTACTTTGCGTATGGGCAGATTTTACAAACATAAAGTAACCCTTCTATTTACCTTGTACAGTTTAATCTCTTTCTCCACATCATTGATGCTCTGATCATCATAAGCAGATGTCTTCTTGCTCACGAATGTCAAACCGCCCAACTTGTCACTGCTGTAGGACTTGTATGGAGAAGGTAGCTTTTCAAAGTCGTTTGCGTCCACATAGACGATGGTTTTTTTGTAGTCGCTAGGGTAGCCCATGCTGTCTCCCCGGCCTGTGTTGATGATGGGGTCCAGTGAGGGCTCTACTGTGGATGGGACTGCGGTGGTCTCAGTTTCTCCAGATTCACTTTCACTGGAATCAGTGTCCTAAACGGACAGTATATGTTAATGGACAATATAATTTAATTGACAATATAAAATTCTGTAGCTGTACTGCTAGCATGGTGGTAATTTTTTTTTCTTTTTTTTTTCTGTTTGGGTCATGCTGGGTTGAAAATCTCATTGTTCCAAAATCCTGCTTCTCATATTTGTGTTGTCACATCTGTTACATCCCACAGCAGTTTTGCAGGACAATTGCTTGGTAAATGGAAACTTAAGTAGTTAAATATATTGTCAGCTCCTTTCCTGTGTATTTTAGTTATTATCAAAGGGTGAGTTGGGACCCAAAAATGGGTCTCAGTTCTGGTCTGGAAAATGCTAAATGCACATAATAAAATGCAACTAGCCAAATAACCATGCATAATCAGTCAAGATAGTAAAATAAATGAGGGAGGAGAAACTTCATGTATCTTTTATTGCTGACATCAACATCTGTGAGTCAACCATGCTACTAGACAATATTATTTTGGATTTTAAGTATTTTTTTTGTTTACTTTTTTATATGATTTTCTATGATTAACACTGTGTTTGCCTTTACATTTGTGAATTTGGCAAACACATTTATCCAAAGCAACTCACAATGCATTTAAGGCATACATTTTATCAGCAATTTCTTTCTCTGGGAATTGAACCTGTTTGAGCTACAGGAAGGTCGCCACTTGATAAATTCCTAAATTCTAGGTTTTGAAATAAAAATAGTCTGTTGTTTAGAAACTGGCCACAGTGGTTCTACATGACAGAAAACGTAAGTATTTTAGCATAATCAAAGTGACTCACGTTCTCCTCTTTGTTCTCATCTGTTTCAGATTCCTCATATGCCTCCTGCAAATGAAAGAAACAGTATTGAGACTCGCAGCAGGGTCACTTACAGTGCGTCTAGACCAACAGAATGCTATTTTTAGAGCCTGCTGTCTTTTATTGGCTATTGTGGGAGTGCAGTGACGTGTGATGTGGTCAGAGGATGAGTCTTCATTTACCTCAGTGTCATCTGCACTGTCTGTGCTTTCATTAGATTCTGTTGGCGTGGTCTGAAACACAACCAAATGCCTTGGCATAAATAAAACAATACAGTATTTCTCATTTCAGCAGTTACCACCTCCTTAAATTTAAATAGCTCAAAGGTGCTAGTTTATATTAGTACTTTGACGTTAAAGTAATAGTTCACCCAAATTACTATAGTCACCCATCATTTATTCACCCTTACAAACCTGTGTGACTTTCTTTCTTCAGTAGATCATTTTTAATTATGTATTAGTCCATGCATTGACAATGCAATAGCACCATAAAAGTATCATTAAAAGTGGTCCAGATACTAAATTTCAAGTGTTCTGAAGTCATACGATATTGATTTTGTGAGGAACAGTGAGCCGTTAACCACTGCAACCAAATGAAAGAGTCATTCAGACCATTTTTTTAATGACTTGAATCAACCGACTTTTTAAAAAGATCTGATTTAAAAGAGTGAATTGGTTCTTTTTTGTCGGTTTCTTGTCATTTTTCAGCTTGACAGCCCCAGTCCTCATTTTATTGAAAAAAGTGGCCAAGATATTACTCAAAATTTCACCTTTTGTGTTCCACAAAGGAAAGAAATGGCACGAGGGTGAATAAATAACAGAATTTTAGGCGTTAACTATTCTCTTATAGACAGAATTACAGTCATATTAGAGGCTAGAGGACGGGTTTTACCTGTGTAGGTTCTGCCTCAAACATATTAGCAGCAGCTTTTCGGAGAATAGGAGGTGGCTGTATGGACAGATGTTTTGTTAAAATAGCAGTGTAGTTTTCTGCACATTATTCATTTCAACACATTTTGTTCATTTTGTCCATTTCATATAAGATACTTGCCCGTTGAACAGCAACAAGCTCTTCTGAGCTCTCTGAACTGCTAGCTGAGCGCTTGACCTGAGAAAAATGTGCATATACACATTAGAAGACAAAAATGGTAGCCAAGTTTTCACAGTTAAAATAACGCTTAATATGAACTTACAGGTAGGCAGAAGACTGTGGCAACGAGGAGCGTTAAAACGATAAGAGTCTTCATTTTTGTGCAAAATACTCTAAAAAGGGAGGAAAACAAAGAGATGCACAGTTACAAAGAACATCAATTTTGACCTTATAAATGTAAATATGTTAGAAAAGCCATTAAAAAGTTACGCCAACTAATGCACGGTAATAAGAAATCTATTACAGAGAGGATTGCCTGTGCTCAACTGCCTCAAGAGTGGGTATTTTTGGTATTTACGCATTTACTGCAAGGCAAACCGACCCGGAAGGAAGCATGCCTTTTAAGGCACTCAGAAACATGTTGGTAAATGCCAAAGAATGCCTACTTCCTACAAGTCCTCACCATGAAACATCTCTCGTTTGTTTTCAGCTACAACTACATTGCATAAAGTATAAGTTGAGGTAACATGTGTTTAGCGATACCTATAATGATCTCCTCTGGTGTATAATTCCAGAAGTTATATGTAGACTATGTAGCAGCCACAATCCCAAGAAATAGCACGCCTCTGGCTCCAGACTTAGTTTCTCATTAGAATCTTCGTTGCTGTGAGCCAAGGCCTAAAATTTGTGGCGTCAAAAGAAAATGTGAAGTGCAGAACAGAACACTAAGTGTCGAAGCGTTTTGTTGAGGCTGCCGGCAGAAGTAGTGGTGGCAACTGTCAGTCAGCCAGTATTATTATTCTTTTGTATGGAACTTTAATTTAGTGGTTGTGTCGCTGGAATAAATGAGTCAGTTGACAAATTAGTAAGGCCTTTATGTGCCATAGCCGCAACTTCCTCTTTTGTCTGTCAAGTTCATGTTAATCATCTCTGCCTATAATAAACTGTGGTTGGAATCATTAAAAGTCTTCATAACTTCAGTCTTGTGCTTACATTGAGGCTGAACAAGAATGGATTTATCTGAACTTTGATGCTTATTTTGCAAGAACTGCATTTGCTGTATGAATTAATTCACGATTTAAGGTTAAAATAGACTGTAGCTACAGAACATGATTGCAAACTGTTCTATGAAAAGTAATTTTCATGATATAAATACAAATAAATGCATGACGAACCTGAAAAATGGCAAGATTACAAGCAAGTAAATACATTCCACATAAGTACTTGGGCTTCTTTCAACATCTGCATACTGAAACCTTTGATGACAATTGGTTTTTAACCTCAACATCCTAAAACATAAACATAAATGAATTGTTTAATTGTGACTTACCTCTTTCTCTTTGCGAAATTTGAAGTTCTTTGACTATGTCAAAGGATAGACTGAGGTCCTGTTTATCAGATGAGATCTTGCTATGTTTTGATGCTGGTGAGAGATGGCTGCTGGTTGGCTTTTAAACCCTGTTCCCTCTGGAAACAGCCAATGGCTGTGAAGCTTGTGATGTCATGAGGTTTACCGCTGCTGTCCCACCTTTTTGCTCCCACTCTTCCTGTGGTTTATATGGCCAGGCAATGCAAACATTTACAGCCAGGCATGACAAGCAGAAAAAATAATACATATCCTGTGTTGTTCTTAGGATCCTTGATAAAATGTTGTCATGCTTATTATTATTAACATATTATGCATATACCATGGAAAGACTCAATGTCCACTTTAATTGTTATTGTACCATAAAACAGGGCAAATAAATATTTAATGGCTTCAATTAAGGGGGTTGAATGCCTCTGGCTATAAAGCAGAATGAAGTGTTAAGTGTGTAATCAGTTCAAACTTAAGTAGGGAACAGTGTGTAACAGAAAATCACAAAAGGACCAGTTTAATATATTAAAATTTTATATTTAGTAGTGTTTGCTAAGTACTATTACTATTGATTTTGCTCAAGGTTAGGGATTCAAATTTCCGCTATGAACATGAACGATACCTCAAATTGTGTGGCTTGTTGAGGGAAAGTGTGGATTTTAGAGAGAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU482875 True 4730 lncRNA 0.37 2 4233809 4275246

Neighbor

gene id symbol gene type direction distance location
CI01000304_04223309_04223602 NA coding upstream 10040 4223309 ~ 4223769 (+)
CI01000304_04190428_04208535 NA coding upstream 25111 4190428 ~ 4208698 (+)
CI01000304_04170630_04190266 NA coding upstream 43543 4170630 ~ 4190266 (+)
CI01000304_03984177_03996203 KATNAL2 coding upstream 237408 3984177 ~ 3996401 (+)
CI01000304_03975032_03978067 SIGMAR1, SIGMAR1.L coding upstream 255264 3975032 ~ 3978545 (+)
CI01000304_04318151_04331824 SH3BP2 coding downstream 42905 4318151 ~ 4331892 (+)
CI01000304_04346530_04362348 VLDLR coding downstream 71284 4346530 ~ 4363156 (+)
CI01000304_04365876_04367947 KCNV2, KCNV2A coding downstream 90365 4365611 ~ 4368201 (+)
CI01000304_04381131_04396006 TRAPPC13 coding downstream 105885 4381131 ~ 4396075 (+)
CI01000304_04407815_04421342 NLN coding downstream 132108 4407354 ~ 4421434 (+)
G420466 NA non-coding upstream 126251 4107238 ~ 4107558 (+)
G420464 NA non-coding upstream 127932 4105637 ~ 4105877 (+)
G420456 NA non-coding upstream 161852 4071703 ~ 4071957 (+)
G420454 NA non-coding upstream 170262 4063271 ~ 4063547 (+)
G420333 NA non-coding upstream 223813 3942452 ~ 4009996 (+)
G420504 NA non-coding downstream 18319 4293565 ~ 4293939 (+)
G420513 NA non-coding downstream 33573 4308819 ~ 4309407 (+)
G420642 NA non-coding downstream 276820 4552066 ~ 4552528 (+)
G420655 NA non-coding downstream 344876 4620122 ~ 4620710 (+)
G420663 NA non-coding downstream 357084 4632330 ~ 4632603 (+)
G418981 NA other upstream 2140131 2092494 ~ 2093678 (+)
G418116 NA other upstream 3358560 872670 ~ 875249 (+)
G418059 NA other upstream 3669358 558092 ~ 564451 (+)
G417987 NA other upstream 4005956 226703 ~ 227853 (+)
G420445 NA other downstream 28090 4303336 ~ 4303832 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 897977 5173426 ~ 5176791 (+)
G421162 NA other downstream 1965987 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 3077403 7352621 ~ 7354396 (+)
G421435 NA other downstream 3208895 7484141 ~ 7484688 (+)

Expression


Co-expression Network