G420445


Basic Information

Item Value
gene id G420445
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4303336 ~ 4303832 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU482914
GGTCCTAAGTATTCAGACCCTTTGCTGTGACACTCATATATTTAACTCAGGTGCTTTCCATTTCTTCTGATCATCCTTGAGATGGTTCTACACCTTCATTTGAGTCCAGCTGTGTTTGATTATACTGATTGGACTTGATTAGGAAAGCCACACACCTGTCTATATAAGACCTTACAGCTCACAGTGCATGTCAGAGCAAATGAGAATCATGAGGTCAAAGGAACTGCCTGAAGAGCTCAGAGACAGAATTGTGGCAAGGCACAGATCTGGCCAAGGTTACAAAAAAAATTCTGCTGCACTTAAGGTTCCTAAGAGCACAGTGGCCTCCATAATCCTTAAATGGAAGACGTTTGGGATGACCAGAACCCTTCCTAGAGCTGGCCGTCCGGCCAAACTGAGCTATCGGGGGAGAAGAGCCTTGGTGAGAGAGGTAAAGAAGAACCCAAAGATCACTGTGGCTGAGCTCCAGAGATGCAGTCGGGAGATGGGAGAAAGTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU482914 True 497 TUCP 0.46 1 4303336 4303832

Neighbor

gene id symbol gene type direction distance location
CI01000304_04236578_04239825 NA coding upstream 62941 4236338 ~ 4240395 (+)
CI01000304_04223309_04223602 NA coding upstream 79567 4223309 ~ 4223769 (+)
CI01000304_04190428_04208535 NA coding upstream 94638 4190428 ~ 4208698 (+)
CI01000304_04170630_04190266 NA coding upstream 113070 4170630 ~ 4190266 (+)
CI01000304_03984177_03996203 KATNAL2 coding upstream 306935 3984177 ~ 3996401 (+)
CI01000304_04318151_04331824 SH3BP2 coding downstream 14319 4318151 ~ 4331892 (+)
CI01000304_04346530_04362348 VLDLR coding downstream 42698 4346530 ~ 4363156 (+)
CI01000304_04365876_04367947 KCNV2, KCNV2A coding downstream 61779 4365611 ~ 4368201 (+)
CI01000304_04381131_04396006 TRAPPC13 coding downstream 77299 4381131 ~ 4396075 (+)
CI01000304_04407815_04421342 NLN coding downstream 103522 4407354 ~ 4421434 (+)
G420504 NA non-coding upstream 9397 4293565 ~ 4293939 (+)
G420436 NA non-coding upstream 28090 4233809 ~ 4275246 (+)
G420438 NA non-coding upstream 38135 4263448 ~ 4265201 (+)
G420466 NA non-coding upstream 195778 4107238 ~ 4107558 (+)
G420464 NA non-coding upstream 197459 4105637 ~ 4105877 (+)
G420513 NA non-coding downstream 4987 4308819 ~ 4309407 (+)
G420642 NA non-coding downstream 248234 4552066 ~ 4552528 (+)
G420655 NA non-coding downstream 316290 4620122 ~ 4620710 (+)
G420663 NA non-coding downstream 328498 4632330 ~ 4632603 (+)
G420556 NA non-coding downstream 335631 4639463 ~ 4645086 (+)
G418981 NA other upstream 2209658 2092494 ~ 2093678 (+)
G418116 NA other upstream 3428087 872670 ~ 875249 (+)
G418059 NA other upstream 3738885 558092 ~ 564451 (+)
G417987 NA other upstream 4075483 226703 ~ 227853 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 869391 5173426 ~ 5176791 (+)
G421162 NA other downstream 1937401 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 3048817 7352621 ~ 7354396 (+)
G421435 NA other downstream 3180309 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3674796 7979078 ~ 7980735 (+)

Expression


Co-expression Network