G420556


Basic Information

Item Value
gene id G420556
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4639463 ~ 4645086 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483048
AGGAAAAGCAGCGATGAGTAAAGCTCATGTTCTCCTTTATGAGCCCCTCATCTAACGGCCGCATTTGATTACAGTAAGGCTCAGAGTTGAGGAACTTTTTACAGGATTACTGCCAGTTTCCTCCAGCACACACACACACGCACGCACACACAGAGGCATTCACTGCTGGATGCTGGACCGTCTCTGTGAAACCGGAGTGGGGTGAAGCTTTAATGAGCGGTATGAAGGGATGATGTTGAAGACTGGCCGAGTCAGTCAGGGGAAACAGTGGGGAGTCTCCTTCGGATCGTACAATCCACTCTCGTTTGCCTCTGTTATGCAGTCCATTATGTTTTGATCCCAGTGAAGCCTGAAGAGGCAATAAAAAGCCTAATAACTGCACTAGACTCCACGGCTATCCTCTTGGCAGAGATTGCTGGATATTTCAGAAGAGCAAGGAGGAACATTAAGACTGGAGAATTACAGTTCTTCTTTGGAGTTTGTGAGGCTTTTGGACTCACATCTCACCAGACTGCACTTTACTTTGCAAGAATTAGATGCAATCTGTTTGATTCATCCTTGTTTTATGTGGCACCAACCCTTCACACTTCCTTTCCCACATATAGTAAAGCAAAGTACTTAAACTAGAGATATGAGAAATATCAGATAGAGGAAAATGCCAAATGGAGATGGAAATGGTTTTTATAAAACATCTTTAAAAAATTTCACGATTACACTAGACTAATGATTTCTTAAAATTACGTAATCATGTCCACTCTACTTTGGTGGCAAGTAATGAGGGGTTACATACTAAACTGTGAAAGCTGATCAGCTCACATGGCTCCGGTTCAAAATGCCAAACCACTTATTACAAATTAGTCATGTTTTTGCGGACATGTACCATGGTAATACTGTGGTATTCTTTGGAGTACCTCAAAATACCATGTAAATACAATTATTTATATGTTAAATAATTATTTATATATTATATGATGTAAGTAAGATGTTACCACCATCAAATAACATCACTATACCCTGGTACAGTCATTTTTTGCAAGAGCTACTGCAGATAAGAATCTTTTCCGCAATGTAATGAGAGTCAGATTTACATCTCTTTCTCACCTCACGAAGACCATGATTTAATCTTATTGGATGCAATAAGTGATGTTAACTGTTCGTTTCAAAAGCCTTTTTACAGAGAAAAAATTCCATCAAGTTTCTTATCTGGGTGTAGTGGATAATTAGGGAAATACCTAGAGTTAAACCAAGCATGGGAGAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU483048 True 1260 lncRNA 0.39 2 4639463 4645086

Neighbor

gene id symbol gene type direction distance location
CI01000304_04563922_04573450 NA coding upstream 66013 4563709 ~ 4573450 (+)
CI01000304_04512680_04515061 ZFAND5B coding upstream 123024 4512680 ~ 4516439 (+)
CI01000304_04461555_04498385 ERBIN, ERBB2IP coding upstream 139775 4461186 ~ 4499688 (+)
CI01000304_04407815_04421342 NLN coding upstream 218029 4407354 ~ 4421434 (+)
CI01000304_04381131_04396006 TRAPPC13 coding upstream 243388 4381131 ~ 4396075 (+)
CI01000304_04650911_04659754 TRIM23 coding downstream 5825 4650911 ~ 4660456 (+)
CI01000304_04679406_04680031 NA coding downstream 34214 4679300 ~ 4680037 (+)
CI01000304_04687431_04705845 ADAMTS6 coding downstream 42345 4687431 ~ 4705942 (+)
CI01000304_04708075_04768393 ADAMTS6 coding downstream 62319 4707405 ~ 4768581 (+)
CI01000304_04866074_04866590 PLAC8.1 coding downstream 219900 4864986 ~ 4867070 (+)
G420663 NA non-coding upstream 6860 4632330 ~ 4632603 (+)
G420655 NA non-coding upstream 18753 4620122 ~ 4620710 (+)
G420642 NA non-coding upstream 86935 4552066 ~ 4552528 (+)
G420513 NA non-coding upstream 330056 4308819 ~ 4309407 (+)
G420504 NA non-coding upstream 345524 4293565 ~ 4293939 (+)
G420673 NA non-coding downstream 25477 4670563 ~ 4670788 (+)
G420554 NA non-coding downstream 27348 4672434 ~ 4672940 (+)
G420622 NA non-coding downstream 139843 4784929 ~ 4785256 (+)
G420677 NA non-coding downstream 140617 4785703 ~ 4785966 (+)
G420685 NA non-coding downstream 153596 4798682 ~ 4798933 (+)
G420445 NA other upstream 335631 4303336 ~ 4303832 (+)
G418981 NA other upstream 2545785 2092494 ~ 2093678 (+)
G418116 NA other upstream 3764214 872670 ~ 875249 (+)
G418059 NA other upstream 4075012 558092 ~ 564451 (+)
G417987 NA other upstream 4411610 226703 ~ 227853 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other downstream 528137 5173426 ~ 5176791 (+)
G421162 NA other downstream 1596147 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2707563 7352621 ~ 7354396 (+)
G421435 NA other downstream 2839055 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3333542 7979078 ~ 7980735 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location