Gene
RNA
| Item | Value |
|---|---|
| gene id | G420728 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 4871227 ~ 4873291 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU483221 | True | 1017 | lncRNA | 0.36 | 4 | 4871227 | 4873291 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_04866074_04866590 | PLAC8.1 | coding | upstream | 4157 | 4864986 ~ 4867070 (+) |
| CI01000304_04708075_04768393 | ADAMTS6 | coding | upstream | 102646 | 4707405 ~ 4768581 (+) |
| CI01000304_04687431_04705845 | ADAMTS6 | coding | upstream | 165285 | 4687431 ~ 4705942 (+) |
| CI01000304_04679406_04680031 | NA | coding | upstream | 191190 | 4679300 ~ 4680037 (+) |
| CI01000304_04650911_04659754 | TRIM23 | coding | upstream | 210771 | 4650911 ~ 4660456 (+) |
| CI01000304_04876496_04883240 | NA | coding | downstream | 3045 | 4876336 ~ 4883702 (+) |
| CI01000304_04902333_04911640 | LIN54 | coding | downstream | 26924 | 4900215 ~ 4911778 (+) |
| CI01000304_04989817_04997932 | NA | coding | downstream | 115071 | 4988362 ~ 4997932 (+) |
| CI01000304_05085761_05095609 | AK3 | coding | downstream | 212305 | 5085596 ~ 5096251 (+) |
| CI01000304_05122605_05137890 | EXD3 | coding | downstream | 249314 | 5122605 ~ 5138169 (+) |
| G420615 | NA | non-coding | upstream | 7368 | 4863383 ~ 4863859 (+) |
| G420694 | NA | non-coding | upstream | 63170 | 4807858 ~ 4808057 (+) |
| G420693 | NA | non-coding | upstream | 63383 | 4807364 ~ 4807844 (+) |
| G420692 | NA | non-coding | upstream | 64008 | 4806806 ~ 4807219 (+) |
| G420690 | NA | non-coding | upstream | 68825 | 4802179 ~ 4802402 (+) |
| G420542 | NA | non-coding | downstream | 42844 | 4916135 ~ 4916905 (+) |
| G420543 | NA | non-coding | downstream | 46080 | 4919371 ~ 4922423 (+) |
| G420561 | NA | non-coding | downstream | 50918 | 4924209 ~ 4924509 (+) |
| G420735 | NA | non-coding | downstream | 52997 | 4926288 ~ 4926510 (+) |
| G420736 | NA | non-coding | downstream | 53424 | 4926715 ~ 4927094 (+) |
| G420445 | NA | other | upstream | 567395 | 4303336 ~ 4303832 (+) |
| G418981 | NA | other | upstream | 2777549 | 2092494 ~ 2093678 (+) |
| G418116 | NA | other | upstream | 3995978 | 872670 ~ 875249 (+) |
| G418059 | NA | other | upstream | 4306776 | 558092 ~ 564451 (+) |
| G417987 | NA | other | upstream | 4643374 | 226703 ~ 227853 (+) |
| CI01000304_05173869_05175309 | NRARP, NRARP.L, NRARPA, NRARPB | other | downstream | 299932 | 5173426 ~ 5176791 (+) |
| G421162 | NA | other | downstream | 1367942 | 6241233 ~ 6242997 (+) |
| CI01000304_07352697_07354032 | NA | other | downstream | 2479358 | 7352621 ~ 7354396 (+) |
| G421435 | NA | other | downstream | 2610850 | 7484141 ~ 7484688 (+) |
| CI01000304_07979388_07979919 | TMEM230, TMEM230A | other | downstream | 3105337 | 7979078 ~ 7980735 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
