G420542


Basic Information

Item Value
gene id G420542
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4916135 ~ 4916905 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483034
AGATCATTAAGCACTTATTTTTCACAGTCTACACCTTGGCAATCTTGTCACATTACACTAATCTGGTATTCATAGAGGAAGAGGTGTCGTGTCAAACAGTACAAACATACACTGTAGTTTGTGATGGAAGTGAGCATGCAGTCATAAAATTATCATTATTTACCTAATGTTTAACACTCAAGTAAATACTGGTCAGGCAAAATGATACTGATACAAGGCATACAGAACAATTATTTAATTTCATTTAAAAGCCAAATTGGCCAAGAACAAGCACAACAACTGATTGAAAGTTTCCAACAAGTGTGCTGCCATAAATCGCTCACTTTGTGATGGATCATGGCAAAAAGGAAAAAAACAAAAAACAAAAAAGAACAAGGCCGAAATGTGATGGAATACAAAGTGCTCACAAAATAGTACAAAGTGTTCACTTAGAGTGGACTCATGTCCACTGTAAATCAGAAAAAGTAAATGTCATTTTTACGTTTTATTTGCTGACAATTGGTAGAAGTTCCCCCTTTGCTTTCATGCTTTTAATCTTGGCTTTGATGCTGTCATCCATGGCCTGTCGGCATCTGACTGCATAGTGGGCCAACGTTTCCTCCTTTTCATCCCATGGAGGCAGAGCGTGGAAGACTTCAGGGGCTGCCAAGCTGAGTTCCGCAATGGCTGCTGTCCTGGAAATGGTATTGCGGTCTACACCGACTCTGTCAAAAGCCACTTTCATGGATACGCTACGTCGAAACTCTTGCAGTGCAGCCATATATCGAGCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483034 True 771 lncRNA 0.40 1 4916135 4916905

Neighbor

gene id symbol gene type direction distance location
CI01000304_04902333_04911640 LIN54 coding upstream 4357 4900215 ~ 4911778 (+)
CI01000304_04876496_04883240 NA coding upstream 32433 4876336 ~ 4883702 (+)
CI01000304_04866074_04866590 PLAC8.1 coding upstream 49065 4864986 ~ 4867070 (+)
CI01000304_04708075_04768393 ADAMTS6 coding upstream 147554 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 210193 4687431 ~ 4705942 (+)
CI01000304_04989817_04997932 NA coding downstream 71457 4988362 ~ 4997932 (+)
CI01000304_05085761_05095609 AK3 coding downstream 168691 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 205700 5122605 ~ 5138169 (+)
CI01000304_05149465_05165999 NA coding downstream 231792 5148697 ~ 5166172 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 256772 5173426 ~ 5176791 (+)
G420728 NA non-coding upstream 42844 4871227 ~ 4873291 (+)
G420615 NA non-coding upstream 52276 4863383 ~ 4863859 (+)
G420694 NA non-coding upstream 108078 4807858 ~ 4808057 (+)
G420693 NA non-coding upstream 108291 4807364 ~ 4807844 (+)
G420692 NA non-coding upstream 108916 4806806 ~ 4807219 (+)
G420543 NA non-coding downstream 2466 4919371 ~ 4922423 (+)
G420561 NA non-coding downstream 7304 4924209 ~ 4924509 (+)
G420735 NA non-coding downstream 9383 4926288 ~ 4926510 (+)
G420736 NA non-coding downstream 9810 4926715 ~ 4927094 (+)
G420737 NA non-coding downstream 10999 4927904 ~ 4928306 (+)
G420445 NA other upstream 612303 4303336 ~ 4303832 (+)
G418981 NA other upstream 2822457 2092494 ~ 2093678 (+)
G418116 NA other upstream 4040886 872670 ~ 875249 (+)
G418059 NA other upstream 4351684 558092 ~ 564451 (+)
G417987 NA other upstream 4688282 226703 ~ 227853 (+)
G421162 NA other downstream 1324328 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2435744 7352621 ~ 7354396 (+)
G421435 NA other downstream 2567236 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3061723 7979078 ~ 7980735 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_001956 si:ch211-126i22.5 coding NC_007121.7 CM002894.2 11309814 ~ 11310769 (+)