G420543


Basic Information

Item Value
gene id G420543
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4919371 ~ 4922423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483035
ATTATAACGCATCATAAAATGACAAATAAGACCACATAAGACACACCAGGATGATCGAGTATTTACACACTTGAAAATAAACATCAGTCGTCAGTCTTTGTAGAAGTGCTAAAATAAGGACAAGTTCAGCATCAAGTCGGTACAAAAACAAAACTTTAAAAACTGGTCAGGTGAAGACTTCCTAACCATTATGAAAAGACTGACCTTTCATAACCATACTAAATTCTAATGTCAATTTTTCTCTTTTATAGTAAACATTTGTGGACAATGTGATCTACCTTTCAAGGTTCATAAGAAACATAATACTTGGTTGTGAAAGGTCTCGAACCTAACGAGCCTTTCAATGATTTAAAGTCTGCTTTACTAATGCCAAAGAATTTCATTACACATCAGAAGTTTGTGAGCCCTTGAGTGACCTTTTCACTATATAGACTCATTTCAACACCTCACAGACAGTAAGAAACATCTTTTACACAGAAATTGTTAATTGTCTGGTTGTTTATAATGAATCTCACATTCCTGGCAGTAATTTTATATGTTGCTATATGCTAAGTGGCCTATCCACCTTATTTTTGATGTAATAGTGGCGGTCTCGTCCGCTTCCAGTTATTTTTAGCTGTACAAAAACATCTCATTATGCTGCTTGATATTGCAAACTGGTATTTACTTACCATATTATTTTTAAAGGGGCTATATGTAGAGCTCAGAAACCCTTGTTATTAGTGACACCGGTGGTCATTAAGTGAACTGCAGCCAGCGACTTATTGCTTGTGCTCGCACTCGTGCACGCATAATGTACAAGAGACTGAACGTGATTCAGTGCCGGTGAAGTTCTTTTTCGTTCTTCATTTAGTAGTAAAAAGAAGCTGGAAATACCTTTGCAGCGATATACTGTTAACGAACATCCATCCACGCTGCTGAGAGTGACGTTTAGATGAATATGTAAATATTTGCTGCGTGCCTTCCTTTAATAACAAAATAAACAACAAAAATGACAGTGGTGAGAAAGCAGCAGTTAAGAAAGCATCTGATCATAGCCATGTGGATATGTTTGCACAAGCTCTGCAAATTCACCGGCATCATGTCGATAGATGAGGTAAATAAAGTTACACTGTTATGATAGTTTGATTATAAAGTATATTTGAGACTACAGACTATATAGATGTGGCTATGTGAGACTAGTTTGAATTAAACCCTTTTCTTTGCGTGACACATTGATATTACACTATGGAATGGCTCTTTTGGGAGCGTGCGTAAACGTCACATCCTTTAGCCGCCTTTCCACTATATCGAACATTCACATACGATTGTCGCATTTCACCCACAAGCGGCAGTTGCACGGAACTGAAATTGGTCATGAAGCAACAGTTACCCTCGGCTTATTCACCATGGTAAAATGAATGATTTTAATTAATTTAATACATGTGTGAATATATCCACACAAAACAAATGACCCCCAATATGTCTAAAATAAAAACATAACAGATTTTATAGAGCTAATCAACATAAATAATGATTTAATAATTATAAAATAATTATTTTTGCCATAATTAATAACTGCCATTTTAGAGAAATAGTATTTACAGAATAACATTTAAGTGGAAAAATTTTGGTAATTCTAACTTCTTGCTCATAGTTTTGATTAGAATACATCACATCCAGTCGGCCGGTCGCATACGGTGTAGCCGCAGAAGTTTAATATTTCAACGCATCCGAAGCTCAAATCGGATCCAAAATTTCCACATATGGATATGATCGGAACTCCAGGAAGCTACTGTACTACTCTCCATTGGAAATGAATGTCTTCCGGTCTGTCACTTGTCGGAGATAGTGGAAAGGCGGCTTTTGGATTGTCTTAGAAAAAACATCCAAGTCCTTCACATAAAAATCAGTCCACAGGCTTTCATAGACAAATTAGGAAGCTGGCGAAGGTCTCGTTTTTAAATTTAGTTACAAGCTGTTCAGACATTGGCAATAAAAAAAAAATAAAAATAAAAAAAACCTTTCATCTAGCCCCTTTAATGTATTGTCGTAATTATAAACACTGGTTTGTAGCGCAAATATTTTGACCTTTTACTGCACTTTGTTGTTCTTCTAGTTATTTACCTATAGCAGCTAATGAATTGGAAGTCTCACACATTCATAGAAAACAGCTTACGTATGCATCGCAAAATAAGATGGATAGGATATCACCTAGGTAAAAATTACAAATTTACGAAACATATTGAGTAATAAAACTGTGGAATGGTTATAAACCTTTTAAGTCAATGTCCTGTCAGTCATGCACAAGCATGTAATGAGGATATCATCAATTTAGTGGGATGTTGATTGATAAATCAGAGGAGCAGAGGAAAAAGGAAGAAAAAAGGCAATAAAATACAGTTTAAGGTGGTTTTGATATGGTGATAATTCACACTTTGATATTTAAATATATTGGGTATGAGTAAAAACCATCAGAATGGTTTGACAAAACTCAAAATGTCTTGTTTTGATTGTTACAATGCTACATGACTAACATGAATAAGCACTAGACTATCCTAAAGTTATTTTAAATGGTTATAAACAGGTTTGTTTTGACTAAACGAGTCAATAGTCAGTAACTATCACAGTATAGATAATGTTGGTTTTTTGTTGAAACGAATAAAATGGAAATAGTTAATTTGTCTGACCGTGACTTTTTCATCTCTTAGTGCTGTAGCTGAACTGAATCAACATTTAACGATTCCAAACTGATTCGTTCATGTCCAAGACACCGATCGGTAGCTTCCATTCAATCACTAGGCAAAACAATGTTTCCTTTCAACTGTATGTATAATAATAGCATTTTCCTGTGATTGGAAATTTTTGGGTATTAGCAATTACATATAAGAAGGGTCATTTTTGCCTGAAGATTGTTCGTCACAAAAAATAAAGGACTCTTGAGAAGATTCTTGCTTCTTTTTCTGACCGATTCGAAGCCTGCATTTATTAATACAAGCCTTCTTCAGCTTAGATGATTCCACAGGTGTCCATCCGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483035 True 3017 lncRNA 0.35 2 4919371 4922423

Neighbor

gene id symbol gene type direction distance location
CI01000304_04902333_04911640 LIN54 coding upstream 7593 4900215 ~ 4911778 (+)
CI01000304_04876496_04883240 NA coding upstream 35669 4876336 ~ 4883702 (+)
CI01000304_04866074_04866590 PLAC8.1 coding upstream 52301 4864986 ~ 4867070 (+)
CI01000304_04708075_04768393 ADAMTS6 coding upstream 150790 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 213429 4687431 ~ 4705942 (+)
CI01000304_04989817_04997932 NA coding downstream 65939 4988362 ~ 4997932 (+)
CI01000304_05085761_05095609 AK3 coding downstream 163173 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 200182 5122605 ~ 5138169 (+)
CI01000304_05149465_05165999 NA coding downstream 226274 5148697 ~ 5166172 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 251254 5173426 ~ 5176791 (+)
G420542 NA non-coding upstream 2466 4916135 ~ 4916905 (+)
G420728 NA non-coding upstream 46080 4871227 ~ 4873291 (+)
G420615 NA non-coding upstream 55512 4863383 ~ 4863859 (+)
G420694 NA non-coding upstream 111314 4807858 ~ 4808057 (+)
G420693 NA non-coding upstream 111527 4807364 ~ 4807844 (+)
G420561 NA non-coding downstream 1786 4924209 ~ 4924509 (+)
G420735 NA non-coding downstream 3865 4926288 ~ 4926510 (+)
G420736 NA non-coding downstream 4292 4926715 ~ 4927094 (+)
G420737 NA non-coding downstream 5481 4927904 ~ 4928306 (+)
G420738 NA non-coding downstream 6000 4928423 ~ 4928940 (+)
G420445 NA other upstream 615539 4303336 ~ 4303832 (+)
G418981 NA other upstream 2825693 2092494 ~ 2093678 (+)
G418116 NA other upstream 4044122 872670 ~ 875249 (+)
G418059 NA other upstream 4354920 558092 ~ 564451 (+)
G417987 NA other upstream 4691518 226703 ~ 227853 (+)
G421162 NA other downstream 1318810 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2430226 7352621 ~ 7354396 (+)
G421435 NA other downstream 2561718 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3056205 7979078 ~ 7980735 (+)

Expression


Co-expression Network