G420561


Basic Information

Item Value
gene id G420561
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4924209 ~ 4924509 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483053
CTCTTCTTCTGTCCAGGATCTTTTTGCCGTCAGGTACTTTTCCCCTCTTCCCAAAAGCGACCGCCCCGTTAAGATCCTCCTCGCTGAAGAAGTGCTCGAACAGCAGGTGGAAGAGTCTCATGCTGTCCTGCCGTGACTCCTGCAGCATGGATGCCAGTTTGTAGTGTGGCAGATAGAGTCCGCTTCCTGGAAACAGCTCCTGCTCTCCCAGTCTGGCCGGACTGGACAGCGGCATCTGCGTTCGCTCGTGAAAGACGAGGATCCGATCAATGACTGTCTGCAGGTTTTGTAGGGTTATAGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU483053 True 301 lncRNA 0.54 1 4924209 4924509

Neighbor

gene id symbol gene type direction distance location
CI01000304_04902333_04911640 LIN54 coding upstream 12431 4900215 ~ 4911778 (+)
CI01000304_04876496_04883240 NA coding upstream 40507 4876336 ~ 4883702 (+)
CI01000304_04866074_04866590 PLAC8.1 coding upstream 57139 4864986 ~ 4867070 (+)
CI01000304_04708075_04768393 ADAMTS6 coding upstream 155628 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 218267 4687431 ~ 4705942 (+)
CI01000304_04989817_04997932 NA coding downstream 63853 4988362 ~ 4997932 (+)
CI01000304_05085761_05095609 AK3 coding downstream 161087 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 198096 5122605 ~ 5138169 (+)
CI01000304_05149465_05165999 NA coding downstream 224188 5148697 ~ 5166172 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 249168 5173426 ~ 5176791 (+)
G420543 NA non-coding upstream 1786 4919371 ~ 4922423 (+)
G420542 NA non-coding upstream 7304 4916135 ~ 4916905 (+)
G420728 NA non-coding upstream 50918 4871227 ~ 4873291 (+)
G420615 NA non-coding upstream 60350 4863383 ~ 4863859 (+)
G420694 NA non-coding upstream 116152 4807858 ~ 4808057 (+)
G420735 NA non-coding downstream 1779 4926288 ~ 4926510 (+)
G420736 NA non-coding downstream 2206 4926715 ~ 4927094 (+)
G420737 NA non-coding downstream 3395 4927904 ~ 4928306 (+)
G420738 NA non-coding downstream 3914 4928423 ~ 4928940 (+)
G420739 NA non-coding downstream 4780 4929289 ~ 4929557 (+)
G420445 NA other upstream 620377 4303336 ~ 4303832 (+)
G418981 NA other upstream 2830531 2092494 ~ 2093678 (+)
G418116 NA other upstream 4048960 872670 ~ 875249 (+)
G418059 NA other upstream 4359758 558092 ~ 564451 (+)
G417987 NA other upstream 4696356 226703 ~ 227853 (+)
G421162 NA other downstream 1316724 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2428140 7352621 ~ 7354396 (+)
G421435 NA other downstream 2559632 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3054119 7979078 ~ 7980735 (+)

Expression


Co-expression Network