XLOC_012655 (tat)


Basic Information

Item Value
gene id XLOC_012655
gene name tat
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 13162728 ~ 13179510 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025296
TTTACCTGTTAATCTAATTCACCGCCTTGGAGCGTGATTTCTGTAAAGAGCAAGCTTATAAGACATCATCATTCCAAAACGTGcatagccaaaaaataaaatgtcttttgTGGTGAAAATGAACGGAGTGCAGAACAACGGTATTCACGGCAATGGCATGAACGGAAGCATCATGAATGGGAATGGCGTGCATCATGTGAGTGTGCGGACCCATGTGAGCGTGAACCCCGCCAAACTGAAGGCTGGCAGCCACAGGCAAAGATGGAACGTCAGACCTTCAGAGATGTCCAAAAAAACACTCAATCCCATCCGAGCCATCGTGGACGGGATGAAACTCACCCCCAACCCAGAGAAACCCATGATTGCGCTATCCATTGGTGACCCTACAGTGTTTGGGAACTTGCCAACAGACGACGCTGTTTTGCATGCAATGAAAGATGCAATAGATTCCCACAAATACAATGGATATGCTCCCTCTGTTGGTTATCAAAAGAGCAGAGAAGCTGTGGCAAACTTCTACAGCTGTCCAGAAGCTCCGCTGGAAGGGAAGGATGTGATCTTGGCCAGTGGTTGTAGTCAGGCAATAGAGCTGGCCATCAGCGTGTTGTGTAACCCAGGAGACAATATCCTAGTTCCACGTCCAGGATTTTCCCTCTATAAGACACTGGCAGTGTCTATGGGCATCCAAGTGAAGCACTACAATCTGCTGCCTGAGAAGTCCTGGGAGATTGATCTTCAGCATCTGGAGAGTCTGATCGATAACAAAACTGCCTGTCTGATTGTCAACAACCCATCTAATCCATGCGGCTCTGTGTTTACCAAAGAACACCAACAGAAGATCATTTCTGTGGCATCAAGAAACTGCATCCCTATACTTGCTGATGAGATCTATGGAGACATGGTGTTTCCTGGTTGTGATTTTCGGGCTTTGGCACCTCTCAGCAGTGACGTGCCCATCCTATCCTGTGGCGGTCTGGCCAAGCGCTGGTTGGTGCCTGGCTGGAGGATGGGCTGGATCCTCATCCATGATCGCAACAACATATTTGGATCCGGAATTCGAGAGGGTCTTGTGAAACTAAGCCAGCGGATTTTGGGACCCTGTACTGTGGTTCAGGGGGCATTAGAGAGCATTTTGAATGAGACGCCACCAGAGTTCTACCAAAGCACCATCAGCTTCCTTAAGTCAAACTCAGAGATATGTTTCTCAGAGTTGTCAACCGTTTCCGGCCTGAATCCAGTGATGCCGTCAGGAGCCATGTACATTATGGTGGGGATCGAGATGGAGCATTTCCCAGAATTCCAGAATGATGTGGAGTTCACTGAACGGCTGGTCACTGAGCAATCTGTGTTCTGTTTACCCGCTACGGCATTTGAATACCCAAACTACTTCCGAATTGTAGTGACAGTCCCGGAGGAGATGATGATCGAGGCATGTATTCGCATCAGAGAATTTTGCGCACGTCACTATCGACCTAGGAGCCAAGACAGTCACGAACTGGACCAGTGAGAAGATAAAAAGAGACAGAAAAGGGAAGAATAAAAGATGAAAGTCTGATGAAAGCGATGCATGAAGCTGCAGAAAGACGGAAAGTTGTGCATTACATGGGACAACGACACATTTTCCCTTTCAGGAAACTCACAGTTCTATGCaaatatcatatttatatttttatatgagtTAGTATTATATTGATATTGTATGAGTACTTGTAGTCTTCTTTTTCTTACACTGTATTGGGCATTGTGGAAAGTTTGGAAACATTGGCTTTGTCCAAAAAAGGCCAATTTGTGTATAACCTGCATGATGTGAAGTATTTATCTACATGTAATCCTGTTTTCGGAATAGTCCATTTTGTAGTATGTTTAATTAGCATCTGTTTAATTTGCATGCTCAACAAAAAGAGACAAAATGACATGTATAGCACCTATATGCTATCTAATGCtccttaaatttttattttgagttGTTACATCCCACCCCCCAACCCGAAAAAgctatttaaataaaagtgtatcaagattt
>TCONS_00025297
GGCATGAACGGAAGCATCATGAATGGGAATGGCGTGCATCATGTGAGTGTGCGGACCCATGTGAGCGTGAACCCCGCCAAACTGAAGGCTGGCAGCCACAGGCAAAGATGGAACGTCAGACCTTCAGAGATGTCCAAAAAAACACTCAATCCCATCCGAGCCATCGTGGACGGGATGAAACTCACCCCCAACCCAGAGAAACCCATGATTGCGCTATCCATTGGTGACCCTACAGTGTTTGGGAACTTGCCAACAGACGACGCTGTTTTGCATGCAATGAAAGATGCAATAGATTCCCACAAATACAATGGATATGCTCCCTCTGTTGGTTATCAAAAGAGCAGAGAAGCTGTGGCAAACTTCTACAGCTGTCCAGAAGCTCCGCTGGAAGGGAAGGATGTGATCTTGGCCAGTGGTTGTAGTCAGGCAATAGAGCTGGCCATCAGCGTGTTGTGTAACCCAGGAGACAATATCCTAGTTCCACGTCCAGGATTTTCCCTCTATAAGACACTGGCAGTGTCTATGGGCATCCAAGTGAAGCACTACAATCTGCTGCCTGAGAAGTCCTGGGAGATTGATCTTCAGCATCTGGAGAGTCTGATCGATAACAAAACTGCCTGTCTGATTGTCAACAACCCATCTAATCCATGCGGCTCTGTGTTTACCAAAGAACACCAACAGAAGATCATTTCTGTGGCATCAAGAAACTGCATCCCTATACTTGCTGATGAGATCTATGGAGACATGGTGTTTCCTGGTTGTGATTTTCGGGCTTTGGCACCTCTCAGCAGTGACGTGCCCATCCTATCCTGTGGCGGTCTGGCCAAGCGCTGGTTGGTGCCTGGCTGGAGGATGGGCTGGATCCTCATCCATGATCGCAACAACATATTTGGATCCGGAATTCGAGAGGGTCTTGTGAAACTAAGCCAGCGGATTTTGGGACCCTGTACTGTGGTTCAGGGGGCATTAGAGAGCATTTTGAATGAGACGCCACCAGAGTTCTACCAAAGCACCATCAGCTTCCTTAAGTCAAACTCAGAGATATGTTTCTCAGAGTTGTCAACCGTTTCCGGCCTGAATCCAGTGATGCCGTCAGGAGCCATGTACATTATGGTGGGGATCGAGATGGAGCATTTCCCAGAATTCCAGAATGATGTGGAGTTCACTGAACGGCTGGTCACTGAGCAATCTGTGTTCTGTTTACCCGCTACGGCATTTGAATACCCAAACTACTTCCGAATTGTAGTGACAGTCCCGGAGGAGATGATGATCGAGGCATGTATTCGCATCAGAGAATTTTGCGCACGTCACTATCGACCTAGGAGCCAAGACAGTCACGAACTGGACCAGTGA

Function

symbol description
tat Predicted to enable L-tyrosine:2-oxoglutarate aminotransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within L-phenylalanine catabolic process; biosynthetic process; and tyrosine catabolic process. Is expressed in liver. Human ortholog(s) of this gene implicated in tyrosinemia and tyrosinemia type II. Orthologous to human TAT (tyrosine aminotransferase).

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0009072 aromatic amino acid family metabolic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0006559 L-phenylalanine catabolic process biological_process
GO:0005575 cellular_component cellular_component
GO:0016740 transferase activity molecular_function
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function
GO:0004838 L-tyrosine molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
ko00270 Cysteine and methionine metabolism
ko00350 Tyrosine metabolism
ko00360 Phenylalanine metabolism
ko00400 Phenylalanine, tyrosine and tryptophan biosynthesis
ko00130 Ubiquinone and other terpenoid-quinone biosynthesis
ko00904 Diterpenoid biosynthesis
ko00950 Isoquinoline alkaloid biosynthesis
ko00960 Tropane, piperidine and pyridine alkaloid biosynthesis
ko00401 Novobiocin biosynthesis
ko03230 Viral genome structure
ko05170 Human immunodeficiency virus 1 infection
ko01007 Amino acid related enzymes
ko00536 Glycosaminoglycan binding proteins
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-1144 Predicted to enable L-tyrosine:2-oxoglutarate aminotransferase activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within L-phenylalanine catabolic process; biosynthetic process; and tyrosine catabolic process. Is expressed in liver. Human ortholog(s) of this gene implicated in tyrosinemia and tyrosinemia type II. Orthologous to human TAT (tyrosine aminotransferase).

Ensembl:

ensembl_id ENSDARG00000069630

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025296 False 2023 mRNA 0.44 12 13162728 13179510
TCONS_00025297 True 1353 mRNA 0.49 11 13164325 13178994
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Neighbor

gene id symbol gene type direction distance location
XLOC_012654 NA coding upstream 2974 13133657 ~ 13159754 (+)
XLOC_012653 GAN coding upstream 59961 13077800 ~ 13102767 (+)
XLOC_012652 NA coding upstream 220708 12941800 ~ 12942020 (+)
XLOC_012651 tbxas1 coding upstream 328405 12655766 ~ 12834323 (+)
XLOC_012650 NA coding upstream 508083 12580449 ~ 12654645 (+)
XLOC_012656 zgc:56622 coding downstream 3018 13182528 ~ 13194362 (+)
XLOC_012657 cotl1 coding downstream 24321 13203831 ~ 13216672 (+)
XLOC_012658 plcg2 coding downstream 56204 13235714 ~ 13293642 (+)
XLOC_012659 si:ch211-260p9.3 coding downstream 121258 13300768 ~ 13307257 (+)
XLOC_012660 si:ch211-260p9.3 coding downstream 130352 13309862 ~ 13313337 (+)
XLOC_012649 NA non-coding upstream 700218 12452154 ~ 12462510 (+)
XLOC_012648 NA non-coding upstream 799902 12360479 ~ 12362826 (+)
XLOC_012662 NA non-coding downstream 314730 13494240 ~ 13515308 (+)
XLOC_012664 BX649568.1 non-coding downstream 769300 13948810 ~ 13948924 (+)
XLOC_012665 NA non-coding downstream 1054859 14234369 ~ 14239459 (+)
XLOC_012675 BX649610.2 non-coding downstream 1809569 14989079 ~ 14996705 (+)
XLOC_012680 NA non-coding downstream 2253196 15432706 ~ 15440860 (+)

Expression

Expression of XLOC_012655(tat) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Expression of XLOC_012655(tat) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 100.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00020613 NA misc CM030127.1 CM030127.1 25934901 ~ 25948343 (-)