G420548


Basic Information

Item Value
gene id G420548
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4931127 ~ 4932115 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483040
GATCCATTTCAGGGTTTACACCAATTGAAGCCTCTCCGTAAGACAAAGAAGATCTGGGATATTCGTCCCGGTGTAGCACCCCCATAGCGTCAATCCTTCCAGAATGAGGTAAGGCTGCCAAACTTTGACTGCATGCTGGGTTTGAGTTCATGTGCATTTTGTTCTGAGTAACATGGAAAGGCGCGCGCAAGGGTTTGATCATGGATGTAGGAGAGTTGTCCAACGGTGACGAGGACACCGCCATGGAATCGCCGTCTACAGAGGAAGGCTTCTGGGACATCGAAGACCTAGATGACGGTCTGTTGTGAAGGTTTGACTTGGGCGACTGTGTAATGCCTCCAGTAGAGCGGTTTCCCTCCGAGCTGCCAGGTATCTGTGGGTTGGCCACACTGTAATAGTCTTCACCCCTCTCTTGTTTGATTTTCTTCAACGCCGGGTCAGTGCTGTCCTCAGGTCCTGGTCCTTTGCCGGCTCTTTTCCTGTGTGTGACGTTAGAGGTTTGGTTGAAATCAGAGTCGCCGTCTTCGTCGGTGGCCGACGACTCGCAGACGATGTCGTACAGGTTGTTATTGTACTCCTCGCCATTATCGTCCATCTCAGAAGGTTCGCTGCAGTTGGAAATGTCACAAGAGTCGTGAATCTGACTGGAATCTCCTTGGCTGGAATCGCCCTTGTTTTTTCCGGCACTGCCGAGGAAGCGCTCTGCTGAGGTGTTTTGCATGACGGCAGCTGCCTGAATCATACTGTCCGTGTTGATGCTTCGGCTTTCTTGGTAGCACATCCGTTCCTTGTTTCCCGTTTTGCAGGTGGTATTGAGTGGCCAGTGGTAGGCGTGACCGGCGCTGCAGCCCCACAGGGCTGTAAGGGTGCCGTGAGAGCCCTCATTGAGCATGTGTTTTAGGTTGGGGATCAAGGTGCAGATTGTTCCATGACTGTGGGCCCATTTCACCAGTTTAGCGAGGTTGTCGGAGGAAGTGTGTAAGCAGTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483040 True 989 lncRNA 0.52 1 4931127 4932115

Neighbor

gene id symbol gene type direction distance location
CI01000304_04902333_04911640 LIN54 coding upstream 19349 4900215 ~ 4911778 (+)
CI01000304_04876496_04883240 NA coding upstream 47425 4876336 ~ 4883702 (+)
CI01000304_04866074_04866590 PLAC8.1 coding upstream 64057 4864986 ~ 4867070 (+)
CI01000304_04708075_04768393 ADAMTS6 coding upstream 162546 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 225185 4687431 ~ 4705942 (+)
CI01000304_04989817_04997932 NA coding downstream 56247 4988362 ~ 4997932 (+)
CI01000304_05085761_05095609 AK3 coding downstream 153481 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 190490 5122605 ~ 5138169 (+)
CI01000304_05149465_05165999 NA coding downstream 216582 5148697 ~ 5166172 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 241562 5173426 ~ 5176791 (+)
G420739 NA non-coding upstream 1570 4929289 ~ 4929557 (+)
G420738 NA non-coding upstream 2187 4928423 ~ 4928940 (+)
G420737 NA non-coding upstream 2821 4927904 ~ 4928306 (+)
G420736 NA non-coding upstream 4033 4926715 ~ 4927094 (+)
G420735 NA non-coding upstream 4617 4926288 ~ 4926510 (+)
G420544 NA non-coding downstream 8652 4940767 ~ 4943519 (+)
G420746 NA non-coding downstream 104280 5036395 ~ 5036620 (+)
G420747 NA non-coding downstream 104581 5036696 ~ 5037056 (+)
G420530 NA non-coding downstream 105256 5037371 ~ 5038662 (+)
G420600 NA non-coding downstream 135429 5067544 ~ 5078275 (+)
G420445 NA other upstream 627295 4303336 ~ 4303832 (+)
G418981 NA other upstream 2837449 2092494 ~ 2093678 (+)
G418116 NA other upstream 4055878 872670 ~ 875249 (+)
G418059 NA other upstream 4366676 558092 ~ 564451 (+)
G417987 NA other upstream 4703274 226703 ~ 227853 (+)
G421162 NA other downstream 1309118 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2420534 7352621 ~ 7354396 (+)
G421435 NA other downstream 2552026 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3046513 7979078 ~ 7980735 (+)

Expression


Co-expression Network