G420544


Basic Information

Item Value
gene id G420544
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 4940767 ~ 4943519 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483036
ATGGATCCGTGTGAACGGGAATCGTTTTGACAATGTTGTCATCTGTACGAAAATCTTTTCAAAAACGCAAAGGAAAAACTTTTACGTTTTTAGTACAATGTTGTCGTGTAAACGTACCCTAAATGTATGTAAGAGTAACGGAGTGCTGTGCTCACTCTCTGCTGCAGCTGTGTAGATGGTGCCCGGCAGTTTGGGGTGCGGATCAGCGGTTTTGGCAGCGATGACCACATTGGCACCGTCCCTCGCAGCTTTGAGAGCAATGGCCTTGCCAATACCTCGGCTCGCTCCGGTAATGAAGACCGTACATCCAGCCAGCTTCCTAAAATAACCAGTGTTCTGCAGCATTCTGACTCGTGTATGATGTCTGAGCTGGGAACAGAGTTATGTGTGTAATATTAAACCAAGGACCTCTAAATGAAAAAGAAGGCTGTGAACTGCCCTTTACTCTAGTTACAGATTCCACTGCGACATAATTCACTCCACTTCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU483036 True 487 lncRNA 0.46 2 4940767 4943519

Neighbor

gene id symbol gene type direction distance location
CI01000304_04902333_04911640 LIN54 coding upstream 28989 4900215 ~ 4911778 (+)
CI01000304_04876496_04883240 NA coding upstream 57065 4876336 ~ 4883702 (+)
CI01000304_04866074_04866590 PLAC8.1 coding upstream 73697 4864986 ~ 4867070 (+)
CI01000304_04708075_04768393 ADAMTS6 coding upstream 172186 4707405 ~ 4768581 (+)
CI01000304_04687431_04705845 ADAMTS6 coding upstream 234825 4687431 ~ 4705942 (+)
CI01000304_04989817_04997932 NA coding downstream 44843 4988362 ~ 4997932 (+)
CI01000304_05085761_05095609 AK3 coding downstream 142077 5085596 ~ 5096251 (+)
CI01000304_05122605_05137890 EXD3 coding downstream 179086 5122605 ~ 5138169 (+)
CI01000304_05149465_05165999 NA coding downstream 205178 5148697 ~ 5166172 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding downstream 230158 5173426 ~ 5176791 (+)
G420548 NA non-coding upstream 8652 4931127 ~ 4932115 (+)
G420739 NA non-coding upstream 11210 4929289 ~ 4929557 (+)
G420738 NA non-coding upstream 11827 4928423 ~ 4928940 (+)
G420737 NA non-coding upstream 12461 4927904 ~ 4928306 (+)
G420736 NA non-coding upstream 13673 4926715 ~ 4927094 (+)
G420746 NA non-coding downstream 92876 5036395 ~ 5036620 (+)
G420747 NA non-coding downstream 93177 5036696 ~ 5037056 (+)
G420530 NA non-coding downstream 93852 5037371 ~ 5038662 (+)
G420600 NA non-coding downstream 124025 5067544 ~ 5078275 (+)
G420517 NA non-coding downstream 247085 5190604 ~ 5197784 (+)
G420445 NA other upstream 636935 4303336 ~ 4303832 (+)
G418981 NA other upstream 2847089 2092494 ~ 2093678 (+)
G418116 NA other upstream 4065518 872670 ~ 875249 (+)
G418059 NA other upstream 4376316 558092 ~ 564451 (+)
G417987 NA other upstream 4712914 226703 ~ 227853 (+)
G421162 NA other downstream 1297714 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2409130 7352621 ~ 7354396 (+)
G421435 NA other downstream 2540622 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 3035109 7979078 ~ 7980735 (+)

Expression


Co-expression Network