G420577


Basic Information

Item Value
gene id G420577
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5211827 ~ 5212627 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483069
GGGCACCCGATGATTCATGTTACTTCAAAACACTTAAAAGAACAGTTCACCGCAATAAGACTTTCATTAGAGATGCTCTCTTTATTGTCCCAAGATAATTTTAACTTAAATCGTATCATTTGCATTTATTTATTTTATGTATCTGCAGGGTTTTTAAAACTAAGTTTTTTTTAAGACCTGCACAAATAAAATTAAAACCATATGAGTGGGGTAGGGCAATGGTTTTAATTGGTGCTGCACAATGATTTGCATATTTTAGCTGAGATTTTCTTAAACAGGAAGAAATGTAATTGGTGGGAAGACAAACAGAGCGAAAGAAAAGGTAGTGAAATGTGCGGTTACCTGGCACCTCCACTCCATACACCACCACATCTTTCATGTCCAGCAGGCGGCTCAGCGTTCCCTCCACCTCGGTGGTGGAGACATTCTCTCCTTTCCAGCGAAATGTGTCTCCTGTGCGGTCTTTGAAATACATGTAGCCATAGTCGTCCATCACCAGCACGTCCCCTGAGAGAGAAGAAGGACAACTTCTATTATCTAGCTGAGTCTATGTAAGTAAGAGTGCGGCTGTGTGGAGAGTTTCAAAATACAATACCTGACAGATATGCGCTATCTCCCTTTTTGAAGACATCGTTGGCAACCTTCTTATTAGTGGCTGATTGATTGACGTAGCCGTCAAATCGTCTGAGGGGGTCGTTCTGAATGATTCGGCCAACCAACTGACCAGGTTCTCCTGAGAAACAGAGTAAGGAAATGGACGTTAAATAATATTTTTGCATTTTCTGTAATAGTGTTAAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483069 True 801 lncRNA 0.41 1 5211827 5212627

Neighbor

gene id symbol gene type direction distance location
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding upstream 36302 5173426 ~ 5176791 (+)
CI01000304_05149465_05165999 NA coding upstream 45655 5148697 ~ 5166172 (+)
CI01000304_05122605_05137890 EXD3 coding upstream 73658 5122605 ~ 5138169 (+)
CI01000304_05085761_05095609 AK3 coding upstream 115576 5085596 ~ 5096251 (+)
CI01000304_04989817_04997932 NA coding upstream 213895 4988362 ~ 4997932 (+)
CI01000304_05277392_05292162 DBH coding downstream 64474 5277101 ~ 5292162 (+)
CI01000304_05394708_05400373 NA coding downstream 181225 5393852 ~ 5400616 (+)
CI01000304_05489571_05504308 NA coding downstream 276898 5489525 ~ 5508080 (+)
CI01000304_05541965_05547732 NA coding downstream 328911 5541538 ~ 5547877 (+)
CI01000304_05584729_05612753 STRBP coding downstream 372102 5584729 ~ 5612798 (+)
G420788 NA non-coding upstream 1822 5209597 ~ 5210005 (+)
G420787 NA non-coding upstream 2308 5208774 ~ 5209519 (+)
G420786 NA non-coding upstream 3904 5207703 ~ 5207923 (+)
G420785 NA non-coding upstream 4172 5207310 ~ 5207655 (+)
G420538 NA non-coding upstream 4860 5202272 ~ 5206967 (+)
G420789 NA non-coding downstream 1487 5214114 ~ 5214350 (+)
G420790 NA non-coding downstream 1758 5214385 ~ 5214883 (+)
G420580 NA non-coding downstream 5524 5218151 ~ 5218664 (+)
G420791 NA non-coding downstream 6042 5218669 ~ 5219080 (+)
G420541 NA non-coding downstream 6955 5219582 ~ 5219951 (+)
G420445 NA other upstream 907995 4303336 ~ 4303832 (+)
G418981 NA other upstream 3118149 2092494 ~ 2093678 (+)
G418116 NA other upstream 4336578 872670 ~ 875249 (+)
G418059 NA other upstream 4647376 558092 ~ 564451 (+)
G421162 NA other downstream 1028606 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2140022 7352621 ~ 7354396 (+)
G421435 NA other downstream 2271514 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 2766001 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 3019367 8231293 ~ 8235655 (+)

Expression


Co-expression Network