G420789


Basic Information

Item Value
gene id G420789
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5214114 ~ 5214350 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483287
CGCCTCACGTCGGCTCCATCTTGGCCAAAAAGTTGTGCTTGAACACCAAAAGGACTACAGGACTACATAACTGTCTATATCAGCAGGTATCAATAGTCTATGTTCATCAACCAAAAAGGGAAACCAAAACTAGGACTGCAGATATATAAACCGTAAAACAAAGCAGCGGTTGACTACCATTTTGAATATCAATCGTGCTGAACGCTTTCTTCATTCCAGGCGGCTCGCTATGAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483287 True 237 lncRNA 0.42 1 5214114 5214350

Neighbor

gene id symbol gene type direction distance location
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding upstream 38589 5173426 ~ 5176791 (+)
CI01000304_05149465_05165999 NA coding upstream 47942 5148697 ~ 5166172 (+)
CI01000304_05122605_05137890 EXD3 coding upstream 75945 5122605 ~ 5138169 (+)
CI01000304_05085761_05095609 AK3 coding upstream 117863 5085596 ~ 5096251 (+)
CI01000304_04989817_04997932 NA coding upstream 216182 4988362 ~ 4997932 (+)
CI01000304_05277392_05292162 DBH coding downstream 62751 5277101 ~ 5292162 (+)
CI01000304_05394708_05400373 NA coding downstream 179502 5393852 ~ 5400616 (+)
CI01000304_05489571_05504308 NA coding downstream 275175 5489525 ~ 5508080 (+)
CI01000304_05541965_05547732 NA coding downstream 327188 5541538 ~ 5547877 (+)
CI01000304_05584729_05612753 STRBP coding downstream 370379 5584729 ~ 5612798 (+)
G420577 NA non-coding upstream 1487 5211827 ~ 5212627 (+)
G420788 NA non-coding upstream 4109 5209597 ~ 5210005 (+)
G420787 NA non-coding upstream 4595 5208774 ~ 5209519 (+)
G420786 NA non-coding upstream 6191 5207703 ~ 5207923 (+)
G420785 NA non-coding upstream 6459 5207310 ~ 5207655 (+)
G420790 NA non-coding downstream 35 5214385 ~ 5214883 (+)
G420580 NA non-coding downstream 3801 5218151 ~ 5218664 (+)
G420791 NA non-coding downstream 4319 5218669 ~ 5219080 (+)
G420541 NA non-coding downstream 5232 5219582 ~ 5219951 (+)
G420558 NA non-coding downstream 11303 5225653 ~ 5225936 (+)
G420445 NA other upstream 910282 4303336 ~ 4303832 (+)
G418981 NA other upstream 3120436 2092494 ~ 2093678 (+)
G418116 NA other upstream 4338865 872670 ~ 875249 (+)
G418059 NA other upstream 4649663 558092 ~ 564451 (+)
G421162 NA other downstream 1026883 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 2138299 7352621 ~ 7354396 (+)
G421435 NA other downstream 2269791 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 2764278 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 3017644 8231293 ~ 8235655 (+)

Expression


Co-expression Network