Gene
RNA
| Item | Value |
|---|---|
| gene id | G420795 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 5231311 ~ 5231737 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU483294 | False | 427 | lncRNA | 0.39 | 1 | 5231311 | 5231737 |
| TU483293 | True | 227 | lncRNA | 0.43 | 1 | 5231511 | 5231737 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_05173869_05175309 | NRARP, NRARP.L, NRARPA, NRARPB | coding | upstream | 55786 | 5173426 ~ 5176791 (+) |
| CI01000304_05149465_05165999 | NA | coding | upstream | 65139 | 5148697 ~ 5166172 (+) |
| CI01000304_05122605_05137890 | EXD3 | coding | upstream | 93142 | 5122605 ~ 5138169 (+) |
| CI01000304_05085761_05095609 | AK3 | coding | upstream | 135060 | 5085596 ~ 5096251 (+) |
| CI01000304_04989817_04997932 | NA | coding | upstream | 233379 | 4988362 ~ 4997932 (+) |
| CI01000304_05277392_05292162 | DBH | coding | downstream | 45364 | 5277101 ~ 5292162 (+) |
| CI01000304_05394708_05400373 | NA | coding | downstream | 162115 | 5393852 ~ 5400616 (+) |
| CI01000304_05489571_05504308 | NA | coding | downstream | 257788 | 5489525 ~ 5508080 (+) |
| CI01000304_05541965_05547732 | NA | coding | downstream | 309801 | 5541538 ~ 5547877 (+) |
| CI01000304_05584729_05612753 | STRBP | coding | downstream | 352992 | 5584729 ~ 5612798 (+) |
| G420793 | NA | non-coding | upstream | 2019 | 5229030 ~ 5229292 (+) |
| G420792 | NA | non-coding | upstream | 2813 | 5228264 ~ 5228498 (+) |
| G420550 | NA | non-coding | upstream | 3843 | 5226778 ~ 5227468 (+) |
| G420621 | NA | non-coding | upstream | 4877 | 5226136 ~ 5226434 (+) |
| G420558 | NA | non-coding | upstream | 5375 | 5225653 ~ 5225936 (+) |
| G420824 | NA | non-coding | downstream | 62903 | 5294640 ~ 5295422 (+) |
| G420835 | NA | non-coding | downstream | 156913 | 5388650 ~ 5389326 (+) |
| G420879 | NA | non-coding | downstream | 246626 | 5478363 ~ 5478672 (+) |
| G420881 | NA | non-coding | downstream | 249137 | 5480874 ~ 5481156 (+) |
| G420445 | NA | other | upstream | 927479 | 4303336 ~ 4303832 (+) |
| G418981 | NA | other | upstream | 3137633 | 2092494 ~ 2093678 (+) |
| G418116 | NA | other | upstream | 4356062 | 872670 ~ 875249 (+) |
| G418059 | NA | other | upstream | 4666860 | 558092 ~ 564451 (+) |
| G421162 | NA | other | downstream | 1009496 | 6241233 ~ 6242997 (+) |
| CI01000304_07352697_07354032 | NA | other | downstream | 2120912 | 7352621 ~ 7354396 (+) |
| G421435 | NA | other | downstream | 2252404 | 7484141 ~ 7484688 (+) |
| CI01000304_07979388_07979919 | TMEM230, TMEM230A | other | downstream | 2746891 | 7979078 ~ 7980735 (+) |
| CI01000304_08232073_08235598 | NA | other | downstream | 3000257 | 8231293 ~ 8235655 (+) |
