G421973


Basic Information

Item Value
gene id G421973
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5248347 ~ 5297279 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU484630
TAATATTGAACCACTGTACTCACATGAACTGATTTAAATATGTTTTTAGTACATTAATGGATCTTGAGAGAGGAAATGTCATTGCTGGCTATGGAGGCCTCACTGAGCCATTGGATTTCAGCAAAAATATCTTAATTTGTGTTTCGAAGATTAACGAAGGTCTTACGGGTGTGGAACGCCGTGAGGGTGAGTAATAAATGACATAATTTTCATTTTTGGGTGAACTAACCCTTTAAGGTTTTTGAGGAAAACATTCCAGGATTCCTGGAGTCCAGGAGTCCATATAGTGGACTTCACTGGGGTTCACCGGGTTGAAGGTCCAAATTGCAGTTTCAGTGCAGCTTCAAAGGGCTCTACGTGATCCCAAACGAGGAATAATTGTCTTATCTAGCGAAACGATCTGTCATTTTCTAAAAAAATAAAAATGTATATACTTTTTAACTACAAATGCTCATCTTGAACTAGCTCTGAGATCCGCACGCATGACGTAATCACGTAGGAAAGGTCACGCGTGACATAGATGAAAGTACAGATCCAGTGTCTACAAAGCGAACGTGCAAAGACTAAGCTAAACACCCTTTACAAAAAACAAAAAAGGTAAAACAATGATATCAGATGATTTTGAAGCTGGAGGAGAAAATGAGATGGAGTTTTTTGCCCTAGCGTGGTACTTCCACCTACGTTACGTGTGACCTTTCTAGCGGATCACAGAGCAGTGCAAGATGAGCATTTGTGGTTAAAAAAAGTGTGTGTGTATATATATATATATATATATATATATATATATATATAATTTTTTTTTTTTTTTTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU484630 True 811 lncRNA 0.37 2 5248347 5297279

Neighbor

gene id symbol gene type direction distance location
CI01000304_05244209_05247428 FAM163B coding downstream 919 5243884 ~ 5247428 (-)
CI01000304_05231085_05231758 NA coding downstream 14594 5230538 ~ 5233753 (-)
CI01000304_05206827_05224699 SLC27A4 coding downstream 23648 5206577 ~ 5224699 (-)
CI01000304_05199154_05201984 PTGDSA coding downstream 45341 5198975 ~ 5203006 (-)
CI01000304_05194636_05197677 NA coding downstream 50480 5194628 ~ 5197867 (-)
CI01000304_05363977_05376993 CERCAM coding upstream 65547 5362826 ~ 5377522 (-)
CI01000304_05389793_05390092 NA coding upstream 92160 5389439 ~ 5390678 (-)
CI01000304_05410915_05460560 SH2D3CA coding upstream 113636 5410915 ~ 5460560 (-)
CI01000304_05516992_05525104 NA coding upstream 218485 5515764 ~ 5525413 (-)
CI01000304_05550395_05551030 NA coding upstream 253050 5550329 ~ 5551199 (-)
G421962 NA non-coding downstream 18542 5229480 ~ 5229805 (-)
G421961 NA non-coding downstream 18873 5229236 ~ 5229474 (-)
G421952 NA non-coding downstream 70547 5177585 ~ 5177800 (-)
G421545 NA non-coding downstream 209657 5037224 ~ 5038690 (-)
G421907 NA non-coding downstream 217401 5030214 ~ 5030946 (-)
G421993 NA non-coding upstream 80285 5377564 ~ 5377787 (-)
G422013 NA non-coding upstream 95132 5392411 ~ 5392939 (-)
G422014 NA non-coding upstream 95705 5392984 ~ 5393480 (-)
G422015 NA non-coding upstream 107966 5405245 ~ 5405463 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 575400 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 983146 4263846 ~ 4265201 (-)
G419354 NA other downstream 2982106 2262502 ~ 2266241 (-)
G419353 NA other downstream 3012241 2229384 ~ 2236106 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 other upstream 1180172 6480743 ~ 6483986 (-)
G422354 NA other upstream 1333807 6631086 ~ 6631499 (-)
G422378 NA other upstream 1447400 6744679 ~ 6783046 (-)
G422810 NA other upstream 2332880 7630159 ~ 7652703 (-)
G423386 NA other upstream 3564944 8862223 ~ 8865296 (-)

Expression


Co-expression Network