XLOC_012659 (si:ch211-260p9.3)


Basic Information

Item Value
gene id XLOC_012659
gene name si:ch211-260p9.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 13300768 ~ 13307257 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025304
GCAGATTTTTGTATGGGATCCAGTGTTGAAGGGAGTCAGTAAGTGGAACGAGCTGATGGATGATGTCAAGCAACGTAAGATTATTGAGCAACTCCAGATGGGATCTGAAATGACGGTGTATCAGAAAAGGACTGAGAGAATCACTGTTCAGGTCATTATGGAGACCATGCAAGTGGCTTTAACACGCTCAGGTGACAGGATAGTCAAAGTGGTGGACATTTCTGAGCTCAAGGAGGTTCGCCAGTGGGAGACATTCAAGGATTTCCAGCGATTTAACGAAAACAGGGGGAGTGCATTTCGAAGAATTTTTTGCCAATCTGAAAAAGACGTTCAACAGGACAGGAAAACCTGTTTCACCATCTTCTATGGATCTGATTTTACTTTAAAGTCACTGAGTCTAAATGCTCATTCAGTGGAGGATGCGGAAAAATGGCTGACGGGACTGGAGTTACTCAAACAGGAGACACTGGCAGCTCACACACCAGTTATTATAAAGAGTTGGCTGAGGAAACAGATGTATTCGGTTGATCTGACAAAGAAAAACAGCATCACCCTAAAAGAGCTCAAGTCTCTTTTGCCACAGATGAACTTCAATGTGCCAAGTGGACGTTTTCTGGAGGACAGATTTAAGgaGGTTGAAGCAAATGATTATGTCCTCGATTTTCTGCAGTTTCACAAATTGTATGaaattttaatatttgaaaaCCAGACATTGagGTTACACTATAAATCATTCATTTGCCATGCATTTCTCTGCAGTAATATTGATAGAcctgactcttctgtagttgccCTCTACGATTTTCAAAATTTTCTTTTATATCAACAGAAGGAGGCCTGGGCCACAGATTTAATTAAGGTACAAAATTTAATGACCATCTTCATCGATGACCCCACAAGGAGGACAAAAGATCCAGCCTTTACTATTGGAGAGttCCTCAGTTTTCTCTTCTCTAAAGAAAACCAAATTTGCGATGACAAGTTTTCTGAGATTTGCCCACTGGACATGAACAATCCTCTGTCTCACTACTGGATCAACTCGTCTCACAACACATATCTGACTGGAGATCAGCTGCGTAGTGAGTCTTCAACAGAAGCGTATGTGCGCTGTCTGAGACTGGGCTGTCGCTGTATTGAGTTGGACTGCTGGAATGGTCCAGATGAACCTGTTATATTCCATGGTCGAACCATGACCTCCAAGATAAAGTTTAAGGATGTGGTGAAGGCCATCAACAATCATGCTTTCGCAACATCACAGTATCCTGTGGTTCTGTCTATAGAAGAACACTGTGATATCAAGCAACAGAAAATGATGGCTCAGACATTACGAGATGTTTTCCAGGACAAGCTCCTGACTGAACCTCTAGATCCAGAAGCAGAACATCTACCCTCACCAAACCAGCTAAAGGGCAAGATCATCATCAAG

Function

symbol description
si:ch211-260p9.3 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in positive regulation of epithelial cell migration. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process.

GO:

id name namespace
GO:0010634 positive regulation of epithelial cell migration biological_process
GO:0006629 lipid metabolic process biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016787 hydrolase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function
GO:0004435 phosphatidylinositol phospholipase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-185 Predicted to enable phosphatidylinositol phospholipase C activity. Predicted to be involved in positive regulation of epithelial cell migration. Predicted to act upstream of or within intracellular signal transduction and lipid catabolic process.

Ensembl:

ensembl_id ENSDARG00000092862

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025304 True 1426 mRNA 0.42 12 13300768 13307257
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_012658 plcg2 coding upstream 7126 13235714 ~ 13293642 (+)
XLOC_012657 cotl1 coding upstream 84096 13203831 ~ 13216672 (+)
XLOC_012656 zgc:56622 coding upstream 106406 13182528 ~ 13194362 (+)
XLOC_012655 tat coding upstream 121258 13162728 ~ 13179510 (+)
XLOC_012654 NA coding upstream 141014 13133657 ~ 13159754 (+)
XLOC_012660 si:ch211-260p9.3 coding downstream 2605 13309862 ~ 13313337 (+)
XLOC_012661 si:ch211-260p9.3 coding downstream 8482 13315739 ~ 13321062 (+)
XLOC_012662 NA coding downstream 186983 13494240 ~ 13515308 (+)
XLOC_012663 cdh13 coding downstream 485233 13792490 ~ 14134035 (+)
XLOC_012664 BX649568.1 coding downstream 641553 13948810 ~ 13948924 (+)
XLOC_012652 NA non-coding upstream 358748 12941800 ~ 12942020 (+)
XLOC_012650 NA non-coding upstream 646123 12580449 ~ 12654645 (+)
XLOC_012649 NA non-coding upstream 838258 12452154 ~ 12462510 (+)
XLOC_012648 NA non-coding upstream 937942 12360479 ~ 12362826 (+)
XLOC_012665 NA non-coding downstream 927112 14234369 ~ 14239459 (+)
XLOC_012675 BX649610.2 non-coding downstream 1681822 14989079 ~ 14996705 (+)
XLOC_012680 NA non-coding downstream 2125449 15432706 ~ 15440860 (+)

Expression

Expression of XLOC_012659(si:ch211-260p9.3) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.

Expression of XLOC_012659(si:ch211-260p9.3) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.5.
End of interactive chart.

Co-expression Network