G420892


Basic Information

Item Value
gene id G420892
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5582600 ~ 5639159 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483412
ACACACTCACACACTCACACACACACACACTCACACACACACACACACAGCCGCAGGTTCTTTTATCTCCAGATGTGCTTTCCGATCATAGCGTGTGCTCACTGCATAAGTGCTTCCTGTTAGTCATGATCAACGGCTACTGTAAAGGACCTTTAAACTTTCGGTTACACAAGCAGCCCTTCATAGATCTGGTCACATATGGCTATGCATATTCACAATGCCAGTATCCCATCATATACCATTTGCTTTTGCTAATATCAGAAGGGCGCCAGCTAGTGGTTTGAGGAGGAATCTAATTAAAAGTTCACTGTACAGTGTGCTACCTGTCTACTTCCTGTTTTTAGTCTTCCTTGGAGAACCACAATATTGGCCAACACACACAGTACAATAAAAGCAGACCTCAGTCGTACACATGCACACCATCAACACATATGCCCTCCTGTTACAATAACGAAAGTCACGCTAGTTTTCCAGCAGCACTCGTACCTTATGTTGACTCGGACTGTGTTTGTGCAAGTAGTCTTGAGTAGGTCAGTAGATAGAAATGTTAATATCCCCCAGAAGACAGTTCAGTCATCTACGCACCCCAGTCTTTTGTTTAACATCAGTAGTAGAAAGACTAGCGTTAAAGTCTTTTTTTTTTCAGTTAGTAAGTACTTGTGTTTCAAATGGGGTCGCTGGTACCCTAGAAGTAAAGTTTTTGTTTTTACAAAAGGAAAAAAGGAGAGACAAAACCCATGTTGTTCGCATTGTTCCAGCTGCGGGGTGAGAGCCGGACAGGGGAGATAACGGGGGCTGGAGTGTTCGGTCTCTGGCAGTCTGGTCCTGTTAGACGCTCTCTTTGCCTTGAGCTCCTGTCACAGTCTTGATGGAGCTTAATGTCCTGTTGAACCACGTCTTTTTGGCTGCTTGGACTTCGTTTAGAGCCAGACCCAGATGATGTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483412 True 945 lncRNA 0.45 2 5582600 5639159

Neighbor

gene id symbol gene type direction distance location
CI01000304_05541965_05547732 NA coding upstream 34723 5541538 ~ 5547877 (+)
CI01000304_05489571_05504308 NA coding upstream 77976 5489525 ~ 5508080 (+)
CI01000304_05394708_05400373 NA coding upstream 181984 5393852 ~ 5400616 (+)
CI01000304_05277392_05292162 DBH coding upstream 290438 5277101 ~ 5292162 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB coding upstream 407075 5173426 ~ 5176791 (+)
CI01000304_05828658_05832773 MORN5 coding downstream 189499 5828658 ~ 5832803 (+)
CI01000304_05880320_05907760 NA coding downstream 240996 5880155 ~ 5907760 (+)
CI01000304_05931192_05933816 NA coding downstream 292033 5931192 ~ 5933816 (+)
CI01000304_05934136_05935124 NA coding downstream 294977 5934136 ~ 5935787 (+)
CI01000304_05965390_05976384 NA coding downstream 326062 5965221 ~ 5980978 (+)
G420886 NA non-coding upstream 92383 5489984 ~ 5490217 (+)
G420881 NA non-coding upstream 101444 5480874 ~ 5481156 (+)
G420879 NA non-coding upstream 103928 5478363 ~ 5478672 (+)
G420888 NA non-coding downstream 50875 5690034 ~ 5759320 (+)
G421000 NA non-coding downstream 146545 5785704 ~ 5785928 (+)
G421006 NA non-coding downstream 178060 5817219 ~ 5817554 (+)
G421007 NA non-coding downstream 178869 5818028 ~ 5818258 (+)
G421008 NA non-coding downstream 180891 5820050 ~ 5820446 (+)
G420445 NA other upstream 1278768 4303336 ~ 4303832 (+)
G418981 NA other upstream 3488922 2092494 ~ 2093678 (+)
G418116 NA other upstream 4707351 872670 ~ 875249 (+)
G418059 NA other upstream 5018149 558092 ~ 564451 (+)
G421162 NA other downstream 602074 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 1713490 7352621 ~ 7354396 (+)
G421435 NA other downstream 1844982 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 2339469 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 2592835 8231293 ~ 8235655 (+)

Expression


Co-expression Network