G421000


Basic Information

Item Value
gene id G421000
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 5785704 ~ 5785928 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483533
CAAAAATGATGGTGACCTGGCCTAATTTGTAGAGGCTACGTTCACACAGAAACAGAATACGGTTGTTCTGTATTTGTGTACTTAAAGGGATAGTTCCCCCCAAAATTAAAAATCTGTCATCATTTATTCAACCTCTTGATGTTTTAAACCTGTACGACTTTATACAGTACCTTCTGCTGAAACATAGGAGATATTTTCAATAATGTTGGTAATCCAACCATTTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483533 True 225 lncRNA 0.36 1 5785704 5785928

Neighbor

gene id symbol gene type direction distance location
CI01000304_05584729_05612753 STRBP coding upstream 172906 5584729 ~ 5612798 (+)
CI01000304_05541965_05547732 NA coding upstream 237827 5541538 ~ 5547877 (+)
CI01000304_05489571_05504308 NA coding upstream 281080 5489525 ~ 5508080 (+)
CI01000304_05394708_05400373 NA coding upstream 385088 5393852 ~ 5400616 (+)
CI01000304_05277392_05292162 DBH coding upstream 493542 5277101 ~ 5292162 (+)
CI01000304_05828658_05832773 MORN5 coding downstream 42730 5828658 ~ 5832803 (+)
CI01000304_05880320_05907760 NA coding downstream 94227 5880155 ~ 5907760 (+)
CI01000304_05931192_05933816 NA coding downstream 145264 5931192 ~ 5933816 (+)
CI01000304_05934136_05935124 NA coding downstream 148208 5934136 ~ 5935787 (+)
CI01000304_05965390_05976384 NA coding downstream 179293 5965221 ~ 5980978 (+)
G420888 NA non-coding upstream 26384 5690034 ~ 5759320 (+)
G420892 NA non-coding upstream 146545 5582600 ~ 5639159 (+)
G420886 NA non-coding upstream 295487 5489984 ~ 5490217 (+)
G420881 NA non-coding upstream 304548 5480874 ~ 5481156 (+)
G421006 NA non-coding downstream 31291 5817219 ~ 5817554 (+)
G421007 NA non-coding downstream 32100 5818028 ~ 5818258 (+)
G421008 NA non-coding downstream 34122 5820050 ~ 5820446 (+)
G421009 NA non-coding downstream 35266 5821194 ~ 5821775 (+)
G420969 NA non-coding downstream 38254 5824182 ~ 5828278 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 608913 5173426 ~ 5176791 (+)
G420445 NA other upstream 1481872 4303336 ~ 4303832 (+)
G418981 NA other upstream 3692026 2092494 ~ 2093678 (+)
G418116 NA other upstream 4910455 872670 ~ 875249 (+)
G418059 NA other upstream 5221253 558092 ~ 564451 (+)
G421162 NA other downstream 455305 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 1566721 7352621 ~ 7354396 (+)
G421435 NA other downstream 1698213 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 2192700 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 2446066 8231293 ~ 8235655 (+)

Expression


Co-expression Network