G420977


Basic Information

Item Value
gene id G420977
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6120792 ~ 6123362 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU483510
AATAAGCATTTATTTTTTTTCTGCGCATTTTCTTGACAATAAGTGCAAGGCTTTTAAAATCCATGCTGAAAAAGTATGTACAATATGACAAACCAGTGCATTACATAGAAACTTCACAGCAGAGTGTCTCACATGTGACCAAGACCGATGGTCTTCATCTGAGAGTGAGGCTTGATTATCCTACATGTTTTAAACAACTTATTTTTACACACTTTTTGTGTGTTTAAAACATGAATACTGTTGATTGTGATATTATATACAATAGAATCATGGTTGGCATCTCATTTAACGTACAAGAAAAAAAAAAAAAGATGTGACTAGATGATACAAAGATATGACCGTGGACGTTAAAGTTGCAGTGCTAAATATGAAATTGAGCCTGTGAAAACCCTTTTGAACCTACACAGCAATAAATCTTTTCATGCCAACTTAAAAGAAAAAAATTGTGTTGAAATGACAATTGTATTATAAGACGTACTACAGATCATAAGGCAGTACCACATGAATACAAAAGAAAGCCCTTTTTCTAAAACTTCCTGCAGAACACAGTTCACATCTTTACCAATGAATGAGTGTTCAATCAAACCACCGATTTAAATAAAAAATAATTTAATTATATTCAGCACTAAAAACAGAAAAAACAGATTTGAGAAAAACTGCTCCTTCTCTCTGAATGTGATATTCACACTTGAGGGTCAAGCAAAATTTCCAGCATCTCTGCCACATCTAGCATTCTGAGCTTTTATGTTTTTGGCAAAAACGGGAAACTTAAAAATCAAGTATATTGAAAACAAATGATCTTTTCACTGATGGCACTCAATGGGAACATGCGAACAGTAAATTGTGAACATGTAAATAGCGGTGTTTTGTGCTGCACAAAAGCTTGCAATGTAAGATTAACATGTTGCACATGGATTTTACAAAGAAAAATTAAAAGGGGAAGGAACTTTGTGGCACACTATAGTTAGTTGTTGCAAGAACAATATTGCAAAAACAAAACATTTAAAATGTCTAAAACATAAAGACCCCTGAAAATAACAATAATTGCAGAACCAGAAATAATGTAGCTAACATTTTTTTTTTCCTGCTTTAACAGCATAAATCATTGGCTTCTTCCTATCCAAACATTTCTTCTTCCTATTCAAAGACCCAGTGCATTACAAATTAAGGCACTGTATATGTACACTATGTTAGTGCACTATATATGTCTAGTGGTGCAATAGTGCACTCTGTGTTTGACTATTTCTGCTGTTTCTCAGAAACTGTTTCATCTTAGGGATCATATATTTAAATATCCGGCTTAATATGACTTGTTTCCTCAAAAATTATAAATACTGTGTCTCCGAGGCGATCTCAAAAAAATTGCTGTTTTTTGGATCTTCCCAGCTAGCCTGACAACAGCAACATCGACTCAACCAATGGTGTGAGTTTAAGGCAGGGCTGTCGACCAATAGGAGAGTGTTTGGAAATTCTGTTTGAAAACAGTCATTATTTAGTTGGGTGGTGCATAAATTACACACTTTAGCTTTAACATTTCTATTTTGGTCAAGTAATTGTTTTTCTAATATTTACATATGGCAAAAACTGAACAAGAAAAATTGATGGCAGTCCAATTTTATGATTCCAGACATTCATTGAGTCTGCATCCCATCTGGAATACCTGAGAAACGTTGCGGGCATCAAGACGCTTTCTACCACAGAAAACAAGACAGGTATCACACTGAATACAGATGATGCGATTATTTTGATAAAGCCATTATTTCATCATTAATGCAATATTGCAAACATAACTGTATATACACTTTAAGCTTTACATTTACAGTACAAGCCTTTTCCTCTTCATTCTTGAAGACAAAAAGTGTGAAAAACGTCAGTGCCAAAAAGTTGCTTTGTGAACAAAAAGGAATGTGCCAATATTCATAGCCCATAACACTAATCAAAACAAATGCTTTGAACTGAAAAATATCACTGCACAGTGCTTCATCGAAACAAGCTCTAAAAGTGAGTTATTGGAATGGACCTCCATATATAAACCTGTTGCCAATAAGAGTGTATGGTTCTGATTACAGGACCATAGATAACTCTAGATGTTTCCAGGACAGGTTCCTGAGCTTTGCTATGCTGATGATGAATGCCGTAGGGGGGTTACAGATGAGGGTCCGTGGCTGGTGGGATGTTGAGTTCAGGCTAGATGAACCTTTGATGCTTTGCTGTTCAAAGACTCTCATGGTTTGGCAAAATGTCCACCAATCTTGTGGCGTCGCAGAGGTTCACTTGAGTTCACATACAGTCGAATTTTGCAGTGAGCACACGAAGATAAATCAAAGTGTCAAGCAAAGCGCTGGGTTCTCTTTGGTATGCTCTACAATACACTGTTTGTGAAACCAGACTCTGATCTTCATATTTCTGAATGTTCCTAGTGATGGTTCTGCTATGTGATCTCGATGACCTTGAATAGAGGTGTAGTATGAGTTGACCTGAGGGATGGAGGCTACAGAACCGCAAGCTTCAATCAGACTCCTTCATATCTTCCTTCATGTCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU483510 True 2543 lncRNA 0.36 2 6120792 6123362

Neighbor

gene id symbol gene type direction distance location
CI01000304_06052958_06060880 MOCS2 coding upstream 59859 6052958 ~ 6060933 (+)
CI01000304_06006140_06015169 ARL15, ARL15B coding upstream 104990 6006086 ~ 6015802 (+)
CI01000304_05965390_05976384 NA coding upstream 143652 5965221 ~ 5980978 (+)
CI01000304_05934136_05935124 NA coding upstream 185005 5934136 ~ 5935787 (+)
CI01000304_05931192_05933816 NA coding upstream 186976 5931192 ~ 5933816 (+)
CI01000304_06215366_06219149 GOLPH3 coding downstream 91733 6215095 ~ 6219740 (+)
CI01000304_06315989_06316538 NA coding downstream 192071 6315433 ~ 6316538 (+)
CI01000304_06317696_06323233 NA coding downstream 194334 6317696 ~ 6323827 (+)
CI01000304_06331541_06373056 CSGALNACT1A, CSGALNACT1 coding downstream 207854 6331216 ~ 6373208 (+)
CI01000304_06384004_06392366 NA coding downstream 260642 6384004 ~ 6392743 (+)
G421069 NA non-coding upstream 2059 6118524 ~ 6118733 (+)
G421068 NA non-coding upstream 4113 6116298 ~ 6116679 (+)
G421067 NA non-coding upstream 7199 6113345 ~ 6113593 (+)
G421043 NA non-coding upstream 162449 5958110 ~ 5958343 (+)
G421142 NA non-coding downstream 63935 6187297 ~ 6187749 (+)
G421156 NA non-coding downstream 108772 6232134 ~ 6232431 (+)
G421124 NA non-coding downstream 144206 6267568 ~ 6269759 (+)
G421182 NA non-coding downstream 170042 6293404 ~ 6293618 (+)
G421184 NA non-coding downstream 172098 6295460 ~ 6295825 (+)
CI01000304_05173869_05175309 NRARP, NRARP.L, NRARPA, NRARPB other upstream 944001 5173426 ~ 5176791 (+)
G420445 NA other upstream 1816960 4303336 ~ 4303832 (+)
G418981 NA other upstream 4027114 2092494 ~ 2093678 (+)
G418116 NA other upstream 5245543 872670 ~ 875249 (+)
G418059 NA other upstream 5556341 558092 ~ 564451 (+)
G421162 NA other downstream 117871 6241233 ~ 6242997 (+)
CI01000304_07352697_07354032 NA other downstream 1229287 7352621 ~ 7354396 (+)
G421435 NA other downstream 1360779 7484141 ~ 7484688 (+)
CI01000304_07979388_07979919 TMEM230, TMEM230A other downstream 1855266 7979078 ~ 7980735 (+)
CI01000304_08232073_08235598 NA other downstream 2108632 8231293 ~ 8235655 (+)

Expression


Co-expression Network