Gene
RNA
| Item | Value |
|---|---|
| gene id | G421131 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000304 |
| NCBI id | null |
| chromosome length | 18613800 |
| location | 6304075 ~ 6309660 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU483674 | True | 5404 | lncRNA | 0.34 | 2 | 6304075 | 6309660 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000304_06215366_06219149 | GOLPH3 | coding | upstream | 84335 | 6215095 ~ 6219740 (+) |
| CI01000304_06052958_06060880 | MOCS2 | coding | upstream | 243142 | 6052958 ~ 6060933 (+) |
| CI01000304_06006140_06015169 | ARL15, ARL15B | coding | upstream | 288273 | 6006086 ~ 6015802 (+) |
| CI01000304_05965390_05976384 | NA | coding | upstream | 326935 | 5965221 ~ 5980978 (+) |
| CI01000304_05934136_05935124 | NA | coding | upstream | 368288 | 5934136 ~ 5935787 (+) |
| CI01000304_06315989_06316538 | NA | coding | downstream | 5773 | 6315433 ~ 6316538 (+) |
| CI01000304_06317696_06323233 | NA | coding | downstream | 8036 | 6317696 ~ 6323827 (+) |
| CI01000304_06331541_06373056 | CSGALNACT1A, CSGALNACT1 | coding | downstream | 21556 | 6331216 ~ 6373208 (+) |
| CI01000304_06384004_06392366 | NA | coding | downstream | 74344 | 6384004 ~ 6392743 (+) |
| CI01000304_06434499_06453808 | DHX29 | coding | downstream | 124839 | 6434499 ~ 6453906 (+) |
| G421184 | NA | non-coding | upstream | 8250 | 6295460 ~ 6295825 (+) |
| G421182 | NA | non-coding | upstream | 10457 | 6293404 ~ 6293618 (+) |
| G421124 | NA | non-coding | upstream | 34316 | 6267568 ~ 6269759 (+) |
| G421156 | NA | non-coding | upstream | 71644 | 6232134 ~ 6232431 (+) |
| G421142 | NA | non-coding | upstream | 116326 | 6187297 ~ 6187749 (+) |
| G421201 | NA | non-coding | downstream | 166569 | 6476229 ~ 6476435 (+) |
| G421202 | NA | non-coding | downstream | 167019 | 6476679 ~ 6476903 (+) |
| G421203 | NA | non-coding | downstream | 167494 | 6477154 ~ 6477391 (+) |
| G421204 | NA | non-coding | downstream | 185998 | 6495658 ~ 6495882 (+) |
| G421211 | NA | non-coding | downstream | 249822 | 6559482 ~ 6559828 (+) |
| G421162 | NA | other | upstream | 61078 | 6241233 ~ 6242997 (+) |
| CI01000304_05173869_05175309 | NRARP, NRARP.L, NRARPA, NRARPB | other | upstream | 1127284 | 5173426 ~ 5176791 (+) |
| G420445 | NA | other | upstream | 2000243 | 4303336 ~ 4303832 (+) |
| G418981 | NA | other | upstream | 4210397 | 2092494 ~ 2093678 (+) |
| G418116 | NA | other | upstream | 5428826 | 872670 ~ 875249 (+) |
| CI01000304_07352697_07354032 | NA | other | downstream | 1042989 | 7352621 ~ 7354396 (+) |
| G421435 | NA | other | downstream | 1174481 | 7484141 ~ 7484688 (+) |
| CI01000304_07979388_07979919 | TMEM230, TMEM230A | other | downstream | 1668968 | 7979078 ~ 7980735 (+) |
| CI01000304_08232073_08235598 | NA | other | downstream | 1922334 | 8231293 ~ 8235655 (+) |
| CI01000304_08671901_08672203 | NA | other | downstream | 2362110 | 8671770 ~ 8672555 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
