G422256


Basic Information

Item Value
gene id G422256
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000304
NCBI id null
chromosome length 18613800
location 6447744 ~ 6448495 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU484966
GTTCAAGGCAGCCAAAAATGGCACCGAAGATAAGCATTTTGCCAATCTTGACATTGACTGGAAGGGCAGCCAAGTGATGACCAAGCGGTGTTAGGGTGTGGCTATCTTGCTGACAGGCGCTGATCTTCCTCAGCAGGCTGACAGCATTACACACGGCCTGTGGCTGAGGCGCATCAAGAGCTCGACACAGGAAATCCTCTGGAGAGCCATATTCACACTTCATAATATGAAGGCAAAGCTCCTCCAAAGGCACTCTGAGAATCTCAGGGATGGAGTAGTCAATGAAGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU484966 True 288 lncRNA 0.50 2 6447744 6448495

Neighbor

gene id symbol gene type direction distance location
CI01000304_06395132_06433884 SKIV2L2 coding downstream 13860 6395035 ~ 6433884 (-)
CI01000304_06324113_06327228 HVCN1 coding downstream 119565 6324091 ~ 6328179 (-)
CI01000304_06300308_06314871 PPTC7A, PPTC7B, PPTC7.S, PPTC7 coding downstream 132683 6298705 ~ 6315061 (-)
CI01000304_06270879_06289706 TBC1D10AB coding downstream 157234 6267565 ~ 6290510 (-)
CI01000304_06240590_06242902 APLNRB coding downstream 204732 6240466 ~ 6243012 (-)
CI01000304_06461313_06465520 NA coding upstream 11961 6460456 ~ 6465520 (-)
CI01000304_06473293_06476260 NA coding upstream 24798 6473293 ~ 6476366 (-)
CI01000304_06480836_06483554 SUB1L2, SUB1A, SUB1 coding upstream 32248 6480743 ~ 6483986 (-)
CI01000304_06489010_06490993 NA coding upstream 39533 6488028 ~ 6492194 (-)
CI01000304_06507688_06509486 NA coding upstream 59047 6507542 ~ 6509622 (-)
G422246 NA non-coding downstream 122750 6324459 ~ 6324994 (-)
G422240 NA non-coding downstream 183699 6263762 ~ 6264045 (-)
G422232 NA non-coding downstream 216277 6231222 ~ 6231467 (-)
G422231 NA non-coding downstream 216576 6230942 ~ 6231168 (-)
G422318 NA non-coding upstream 52224 6500719 ~ 6501031 (-)
G422321 NA non-coding upstream 62496 6510991 ~ 6519445 (-)
G422331 NA non-coding upstream 111292 6559787 ~ 6560009 (-)
G422332 NA non-coding upstream 111991 6560486 ~ 6560717 (-)
G422343 NA non-coding upstream 163273 6611768 ~ 6612117 (-)
CI01000304_04661808_04672936 PPWD1 other downstream 1774797 4661766 ~ 4672947 (-)
CI01000304_04263955_04264962 NA other downstream 2182543 4263846 ~ 4265201 (-)
G419354 NA other downstream 4181503 2262502 ~ 2266241 (-)
G419353 NA other downstream 4211638 2229384 ~ 2236106 (-)
G422354 NA other upstream 182591 6631086 ~ 6631499 (-)
G422378 NA other upstream 296184 6744679 ~ 6783046 (-)
G422810 NA other upstream 1181664 7630159 ~ 7652703 (-)
G423386 NA other upstream 2413728 8862223 ~ 8865296 (-)

Expression


Co-expression Network