XLOC_012665


Basic Information

Item Value
gene id XLOC_012665
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 14234369 ~ 14239459 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027070
CGCTCTGCAAATACAGGTACACACTGACAGTTAACCCTTTAAAAATGTGTCTATACCACCAACAGACAAACAGAAATATAACTCATTTGTttgttattcttcttattattaaattGATAGTATTTAAGCTATCTATTTTAAACCCAAAAATGTTGTGATCAAGGAATGGTtatgaaaattaattattagCTTTTTTAACATCAGCGTTGTTAAAACTATACTACAACACATACCATAAACAACTGTTctttctggttcttgaatctgattggctgatagccgtgcaatattctgccagtaacatcacacaaaggcctcttcgcccttcacctttgtgtattactccacccgaTACattcagcaacaagcagagagacactacagtttgacaaaaattactgctgttagacaacctaatgtacttttgaggcttttttttgtcaagaatgtagttgtttaaaatgcaactatgcagtttatttataagaatagggcctatttaaaaatatttacaatttctgagagagcccatcagcggccattagcctgccatagagtagaccaaagacagttgatgttttctatccacaagatggcaacagaactgcataataagccctaacgCTTAGAGGATTATAgtagtctgatttctaactacagcagatcaaattATTATCAAACtagtgagcatacctgccaacactcacgTTTTTCCCGGGAGTATCCCATAATTTAGACCAATCTCCCGCAACCAtcctgttttttatttcttccggAAAATTCCAGTAATTTCACCCCTCAtcctttttggtacagtctgtagaCACCCCcaggttgccaactttggtacagtacccgatcGCAGAGGCTGCCCAAAACCCGCGGCAtgatcagtgttgccagattgggcagttttgaatttgatgacATAGGCAGGTAGTGAAAATTTAGCCCCGGTCTTTAGTTATAAACCTGTTATGATCTCCCAAAGAGATGCCGTACCCCCCATTCTTCACATGCAAACGCTTACAACAGTTGTGATCTCCCAAGAATCTCCCAAGGCTTTTTTTTCGGGttaaattattgtgatatcccgattgcaacagagatgTACTGTAGagtgtaacactgtaagaagatatctctgcaGACGGacggcatttcatgtcacgttcgtCCTTATAATcttcatcagctgttttgtcatcactttagatattacgcttTAGAAAGTcgttcaaacactagctctaaagtgaagtGAATTAGAAGGTGATTTAgtttttgacgtcagctgcagatgtgaataaatggcagaagaaagtagttccaaataaaaagggtttttagagtctccatgtttgattttgtttttgtttgatcacactcgtagcagtgcaatatggctgtatatcagttCTGGTGGGACGCTATGCACGCTCCCACCAGTGCTAATATACAGctatatcacactgctacgagtgtgatattgctcatataacactgcagccaattttttaaaaaatgcacagtTAAAGAGATGTTTCACCTAATGtcaattctgtcgtcatttactcacaCGACTTCTTCCGAACCAGTatgagttttttctttttaatacaagagttaaaaaagtttttttgaacAATGTTGGACATGAAATGcaaacattgcattttttttcctactatggatgtcaatggttagaagattctaacattctttaaaaatatcttttgattaaaacgaatgaatgaaattgtttgggtgaaatattcctttaacggtgcatttataataaaaaataaaactttatagtTACAAGATTAGTGTTAATAAGAGCTAAAAAATATTCTCCTAACTATTCTGTCTATACAAGCGTTTTAAATAAGGTTTTACACATTCAAGCCAGGTTTAGACTTCAGGAGTTCCAAAATCCTAACCGAGGATGAAATCTGTTTGGAGTAGGAGTATATTAGTTATTATGAGTTGATTTGTGAAGAAACTAAATGTTATTAACTGGCTCTTTTAATAAATCACAGAGATTTGAGTCAACTTAAGTTTACAGATTTGATTTACTGAAAAGCAGTTAGGCCCTTATTCttaaaatgaagttatgtgtacaGTAGATGTTATCTTAAAACTTCAGTCAGAATTTAATTCACTGACaagtgttaaaataaaaaaaacaaaaaagtgtaaaaaatccCCTTGATTTTGTTATAATATTAAAGAAAGCATTAAATAACCTTTCTCCTcagtctttttttcttctttatatcCCATCCAACCCGTTCCATTTGTACTAATTTAAAAACCATGTTGAACAAGTCCACCGTGTCTCTTTCTCTTTCCCACAAGGACATCGACACACTCATTTTCCATCCCACATTGAAGCCAAAGAGAGCACTGAACAAACCAAACGTGTCAGACGGGCCCCGGAGGAGCCGAGATTTGAAGCCTCAAGTCCATCGCACTTCCTCGTTCTTCGCCATGCATCACTCCTTCAGACAGGCAGGAGTGAAGGAAGATTAACCACGTCCAAGGGTCACTTTTCATTCATCAactcaatttactgtaaaacatcgGTCAGCGGGTTTAAAGCTACAGAGGGAGAGAATGAAGCGCGAGGACAAGAAGAGAGTGCAAAAGAGCCTCGTGAGGATTCCGCTGAAAGACAAGCAAACCCTCCTCCCTTTTTCCTAAATCACACAGTGACCTTTCTCCACCTCTTTTTTTctgtctatcatccatccatcaagccGATCGTCCCCTTGTGGCACAGCTAGTCACCTTTACTCTTTCCAACAGCAGAAGTTCGATCTCCAGCTCTCACAGGTACTTTATACTTCTTTCAAACAACATAACACTTTCTCTAGATTATACAGAGATGTAACGACTGTCAACAATAAATAGAGAGTCATTTATAAacagttactgtaattaatttatatttaaaagggGGTTACTGATATATAGACTGATAAATACAAAACTGAATATGAGTTTTTCTGTGTCTGATTGCTAAAATAAAcccaaaaaatattaattagatgatcttttttgctttcagaaaaCTAGGTAACTTCTACAGATCTTTCTTTTACAAAAAAAGCATGTAGATAAAGTGCtccttattttacaaaaaaatatctaTGAAGTGCATGCTTGCAGATCAACCAGTGGAATTTGTAACTGACCAATGAGAATGACattaaaaataagtgtttattgACAGATACGATATGACAGCTGACATTTATTGTAGATCATTATTAGTTACCATTAGGGTTGTTCTGATACTGATACTAGTATCACAAATACTCTCGCCAAAACAGCAAATCTGGGATCGGTATTGGTAGGTATTTGAAACTATAAACCGATCCAATACTCAGCTTTTTATGACATATGCtccttattttacaaaaaaaatatgagACATGCTCATTCTTTTACAAAAATATCTATAATGTGCATGCTTGCAGACCAACTGGTGAAATTTATAACTGACCAATAACAATGacattaaaaataagcatttactGATACTTAAATGACATCTGACATATATAATAGATCATTAATGGTTACCATAAGGGTTGTTCTGATACCGATATTACTATCGGAAATACTCGCCAATACAGCAAATATTCTGGCATTGGTATTGCAGAGTATTTGTAACTATAAACTGATCTGACACCATGGTTTTTTTTAAGAGACAAATGTTTTATATAGTTAtactgtaaaacttttttttttcagttttcaggGTTTCAGTAAAGTAGAGTAAATGATATTGTTGAATGTCTGAAAATAaaattgtcagaaaaaaaaaaaatactcacagtacacatttttcatgttttattaatgGATAAGTATGaagcacactgtaaaataatTCTGTCAAGTTATACCGGAAGGGTTCCCatttcatgaacagcagatttaAGGACGTTCAATGACTTTTTATAGCACCttcaattttaaaacaaacaccTTTGTAATTCACAGCCCAGCATATATAGTGCCATAAAACTACTTAAAATTTCACATTTGCTTAATATTTATGATCTATATATCAGAGTAATTTTCAAAAAGTTTGACTAAATTCAATGTTGGTAATATTtaaatgcagtttctgaaatgttgAAAAACAGTCAGCATTATTGTACAAGATTTAAAtgtaggattttttatttaagaatttctcagttttttttgCTCCGTTTTTGACAATTGAGTTTAATTgttgaaataaatacataaaaaaagcactttcaaggaatgtttgtttttaagtactttaaagCCCTTGAATGCATATGTTTGAAATTCCAGTACTTTTAAGAAGTGTGGGAATCCCGTACAGGGCTAGTAGTTTTCACATCTGTTTCCACAGATACATTCCAGGTATCAGTATCAGTATCAGCCAATACCCTGAGCTCAGGTATCAAAATCGATATCGGAAAGGAAAAAGGGTATATTAGAACATCCCTAGTTGCCATGGTAAATCTGTGTTAGCATCAAATGGACATTCATGTTTGGTGAAAACTATGATATCCATGCTAAATTTGTGCAAGGGTCACATAGATATTTCTATACTGAGATGAAAAGAATCTGATTCACACACACTTCAAAAACAAATTTCAACACAAATCCACAGCATCAACATGCACAATTTGCATGAAATATTATCTATCAGCTGCCCATTTCCACTCAACTGACGCCTTCAATCTCTCATCCGGGTAAATCAGCTCTGAGAACTGCAGAGAGCCCTTTACTAGGGTTAACCTCTATTACACAAACAGCCACTCGGCACTTTGTTTCAGCAACATTCTCACTCAAGCAAAACTCATCTGAATCTATAAACCTGAGTGCCTCTCGTTTCTTTTCCATTTAATTTCGCCTTCATCTGGTAAAGAGCCAGAGCTCTGTGACATGCCATGTGTCCCTCCTTCTTCATGTTATTGAGAGTGACAGATGAAATTTTATTAGTTTTcctgtctttttttctctctctgcctTTCAGATAGAAACATGCGCTACAGTCTGGCACTAGGTGATGCTGTGGGACAAATCTATTCAAGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027070 True 5091 lncRNA 0.35 1 14234369 14239459
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_012663 cdh13 coding upstream 100334 13792490 ~ 14134035 (+)
XLOC_012664 BX649568.1 coding upstream 285445 13948810 ~ 13948924 (+)
XLOC_012662 NA coding upstream 719061 13494240 ~ 13515308 (+)
XLOC_012661 si:ch211-260p9.3 coding upstream 913307 13315739 ~ 13321062 (+)
XLOC_012660 si:ch211-260p9.3 coding upstream 921032 13309862 ~ 13313337 (+)
XLOC_012666 zgc:173742 coding downstream 37544 14277003 ~ 14332060 (+)
XLOC_012667 si:dkey-246g23.2 coding downstream 102867 14342326 ~ 14421236 (+)
XLOC_012668 kcng4a coding downstream 238281 14477740 ~ 14530633 (+)
XLOC_012669 si:dkey-246g23.4 coding downstream 324626 14564085 ~ 14579787 (+)
XLOC_012670 wfdc1 coding downstream 356087 14595546 ~ 14617707 (+)
XLOC_012654 NA non-coding upstream 1074615 13133657 ~ 13159754 (+)
XLOC_012652 NA non-coding upstream 1292349 12941800 ~ 12942020 (+)
XLOC_012650 NA non-coding upstream 1579724 12580449 ~ 12654645 (+)
XLOC_012675 BX649610.2 non-coding downstream 749620 14989079 ~ 14996705 (+)
XLOC_012680 NA non-coding downstream 1193247 15432706 ~ 15440860 (+)
XLOC_012681 NA non-coding downstream 1194005 15433464 ~ 15441472 (+)
XLOC_012682 NA non-coding downstream 1207164 15446623 ~ 15449445 (+)
XLOC_012683 NA non-coding downstream 1210046 15449505 ~ 15452652 (+)

Expression

Expression of XLOC_012665 in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.

Expression of XLOC_012665 in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1.
End of interactive chart.

Co-expression Network